Bioconductor Motifs

Showing : motifs • reset

votes

1.5k

views

genomation motifs

updated 8.3 years ago by altuna akalin ▴ 20 • written 8.3 years ago by sarah.blackstone7734 • 0

votes

replies

1.5k

views

illumina 450k motifs meme

8.9 years ago Gustavo Fernández Bayón ▴ 440

votes

replies

958

views

motifs TF peakset plots

7.8 years ago rbronste ▴ 60

votes

replies

931

views

pwm motifs jaspar meme motif analysis

6.0 years ago rbronste ▴ 60

votes

replies

1.0k

views

MotifbreakR R motifs

5.6 years ago camerond • 0

5 results • Page 1 of 1

Recent ...

Replies

Answer: Margins for gene_set_enrichment_plot by Leonardo Collado Torres ★ 1.1k

Hi, In version 1.19.4 of `spatialLIBD` @lahuuki re-implemented the `gene_set_enrichment_plot()` function using `ComplexHeatmap::Heatmap(…

Comment: miRTarRnaseq library by mercedeh.movassagh ▴ 20

Maria please read the mirTarRnaSeq paper. In particular, Supplemental Table 2, clarifies all the statistical models, inputs and outputs. If…

Comment: Help using rtracklayer for gene ID extraction by James W. MacDonald 67k

Telling me you can't do something without showing what you tried is not helpful. When posting here, try to put yourself in the shoes of peo…

Comment: miRTarRnaseq library by María Calvo • 0

Hello Mercedeh, excuse me for not explaining it adecuately, Im using the "Part3 - Identify significant miRNA mRNA relationships for 2 time …

Answer: Need new version : tx2gene.gencode.v47.csv by Guido Hooiveld ★ 4.1k

Assuming that you would like to import the results from `salmon`, it is highly recommended to now use `tximeta`. By doing so, all required …

Votes

Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?

Answer: Feature Counts - potential bug with outfile.jcounts

Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2

Answer: Mapping Between GenBank ID's and Uniprot

Awards • All