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Showing :
motifs
•
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0
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759
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Visualizing motif instances in peak data
motifs
TF
peakset
plots
6.7 years ago
rbronste
▴ 60
0
votes
0
replies
741
views
How are the MotifbreakR scores calculated, and how do they relate to one another?
MotifbreakR
R
motifs
4.6 years ago
camerond
• 0
0
votes
0
replies
1.2k
views
Repetitive motifs on Illumina 450k derived sequences
illumina
450k
motifs
meme
7.9 years ago
Gustavo Fernández Bayón
▴ 440
0
votes
1
reply
1.2k
views
Heatmap of motif clusters
genomation
motifs
updated 7.2 years ago by
altuna akalin
▴ 20 • written 7.2 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
654
views
Plotting motif enrichment vs background - Jaspar core vertebrates
pwm
motifs
jaspar
meme
motif analysis
5.0 years ago
rbronste
▴ 60
5 results • Page
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Comment: DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values i
by
ATpoint
★ 3.6k
What is the output of below_zero <- apply(miRNA_counts < 0, 1, sum) > 0 miRNA_counts[below_zero,,drop=FALSE]
Comment: Problem loading HDF5Array in R 4.3.2
by
Mike Smith
★ 6.2k
Based on the error message this looks like the "invalid permissions" are referring to something in memory rather than your file system. If…
Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and
by
Aastha Kapoor
• 0
After several attempts the code has worked. I connected to a faster internet connection. set the timeout (1000000) and run the command. I …
Comment: DESeq2 estimateSizeFactors iterate takes too long
by
Karthik
• 0
Hello, I agree with you, and we are in process of working with collaborators, but I wanted to get a general opinion on the data and get a …
Comment: It's possible to use clusterProfiler without an annotationDBI package
by
Guido Hooiveld
★ 3.8k
Code to show it works: > library(clusterProfiler) > > ## use provided 10 IDs, plus as last one add ID that has a GO annotati…
Votes
Comment: Ensembl down???
Answer: Limma/DESeq2 for unbalanced nested design (paired samples)
Result from GSEA for non-model organism not as expected
Comment: DESeq2 estimateSizeFactors iterate takes too long
Answer: DESeq2 estimateSizeFactors iterate takes too long
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bas_work
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