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motifstack
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4
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826
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motifStack Plotting the correct data positions on x axis
motifStack
R
2.1 years ago
Marwah
• 0
0
votes
7
replies
1.2k
views
How to change the size of yaxis in motifstack
motifstack
plotMotifLogoStack
4.7 years ago
saadmurtazakhan
▴ 10
1
vote
1
reply
659
views
how can I convert a sequence to number
motifStack
updated 5.1 years ago by
Ou, Jianhong
★ 1.3k • written 5.1 years ago by
Bioinformatics
▴ 30
0
votes
0
replies
680
views
Trying to load several MEME formatted motifs for use in motifStack
motifstack
meme
6.1 years ago
aramp10
• 0
1
vote
2
replies
1.1k
views
motifStack importMatrix problem reading meme file to pcm
motifstack
meme
updated 6.1 years ago by
Ou, Jianhong
★ 1.3k • written 6.1 years ago by
lmolla
▴ 10
2
votes
2
replies
847
views
motifStack: how to make the start of motif logos have the same distance to the center
motifStack
updated 6.3 years ago by
Ou, Jianhong
★ 1.3k • written 6.3 years ago by
viyjy
• 0
0
votes
0
replies
974
views
motifstack-GhostScript not working
motifstack
GhostScript
r
7.3 years ago
utra96
• 0
0
votes
10
replies
2.1k
views
motifStack crashes for example from documentation
motifstack
updated 8.2 years ago by
Ou, Jianhong
★ 1.3k • written 8.2 years ago by
map2085
▴ 40
0
votes
1
reply
1.4k
views
MotifStack not plotting?
motifStack
motifStack
10.4 years ago
Ou, Jianhong
★ 1.3k
0
votes
0
replies
1.1k
views
FW: About your motifStack package
motifStack
motifStack
10.5 years ago
Ou, Jianhong
★ 1.3k
0
votes
0
replies
802
views
About your motifStack package
motifStack
motifStack
10.5 years ago
Ou, Jianhong
★ 1.3k
11 results • Page
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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