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mouse4302
•
reset
0
votes
6
replies
1.5k
views
affymetrix annotation
mouse4302
affy
mouse4302
affy
updated 13.3 years ago by
Tim Yates
▴ 250 • written 13.3 years ago by
arne.mueller@novartis.com
▴ 200
0
votes
6
replies
1.4k
views
can't instal MetaData package "mouse4302"
Annotation
mouse4302
Annotation
mouse4302
updated 19.1 years ago by
Seth Falcon
★ 7.4k • written 19.1 years ago by
Gordon Smyth
50k
0
votes
5
replies
2.3k
views
error in ls() unused arguments
mouse4302
affyPLM
mouse4302
affyPLM
updated 15.1 years ago by
Laurent Gautier
★ 2.3k • written 15.1 years ago by
Wijchers, Patrick
▴ 40
0
votes
5
replies
1.3k
views
Genefilter parameters for mouse 430 2
Cancer
mouse4302
genefilter
limma
gcrma
Cancer
mouse4302
genefilter
limma
gcrma
updated 16.0 years ago by
James W. MacDonald
65k • written 16.0 years ago by
Richard Friedman
★ 2.0k
0
votes
4
replies
1.7k
views
Affymetrix mouse 430_2 array - gene expression and annotation
Annotation
mouse4302
probe
oligo
Annotation
mouse4302
probe
oligo
updated 9.7 years ago by
James W. MacDonald
65k • written 9.7 years ago by
Rao,Xiayu
▴ 550
0
votes
4
replies
1.4k
views
AffyID mapping question
Transcription
mouse4302
Transcription
mouse4302
updated 11.7 years ago by
Marc Carlson
★ 7.2k • written 11.7 years ago by
Guest User
★ 13k
0
votes
4
replies
1.3k
views
Guidance to handle .CEL file in R
R
.cel fiels
microarray
mouse4302
5.7 years ago
aacharya
• 0
0
votes
4
replies
1.1k
views
mouse4302.db vs mouse 4302
Annotation
Cancer
mouse4302
Annotation
Cancer
mouse4302
updated 16.0 years ago by
Marc Carlson
★ 7.2k • written 16.0 years ago by
Richard Friedman
★ 2.0k
0
votes
3
replies
1.1k
views
latest devel GO package not built in R2.0.0
GO
mouse4302
affy
annaffy
GO
mouse4302
affy
annaffy
updated 19.5 years ago by
John Zhang
★ 2.9k • written 19.5 years ago by
Dick Beyer
★ 1.4k
0
votes
3
replies
2.5k
views
AFFX-BioB-3_at annotation
hgu133plus2
mouse4302
hgu133plus2
mouse4302
18.0 years ago
Wu, Xiwei
▴ 350
0
votes
3
replies
966
views
mouse4302,db_2.0.2 in AffylmGUI
Annotation
Cancer
mouse4302
affy
limma
Annotation
Cancer
mouse4302
affy
limma
updated 16.0 years ago by
Keith Satterley
▴ 450 • written 16.0 years ago by
Richard Friedman
★ 2.0k
0
votes
3
replies
962
views
KEGGHyperGParams variable "mouse4302PATH2EG" was not found
Annotation
GO
hgu133plus2
moe430b
mouse4302
Annotation
GO
hgu133plus2
moe430b
mouse4302
updated 14.9 years ago by
Marc Carlson
★ 7.2k • written 14.9 years ago by
John Coulthard
▴ 170
0
votes
3
replies
1.7k
views
Can BioC still convert exprSet to ExpressionSet?
hgu133a
hgu133plus2
mouse4302
convert
hgu133a
hgu133plus2
mouse4302
convert
updated 14.9 years ago by
Martin Morgan
25k • written 14.9 years ago by
David Rossell
▴ 100
0
votes
3
replies
1.3k
views
mouse4302.db and can't find gene symbol annotation
Annotation
mouse4302
probe
Annotation
mouse4302
probe
updated 11.4 years ago by
James W. MacDonald
65k • written 11.4 years ago by
Andrew Yee
▴ 350
0
votes
3
replies
1.9k
views
BiomaRt: getLDS keeps returning NULL
mouse4302
biomaRt
mouse4302
biomaRt
updated 11.3 years ago by
Nolwenn Le Meur
▴ 10 • written 11.3 years ago by
Guest User
★ 13k
0
votes
3
replies
2.4k
views
Filtering out duplicate probes in Affy data
Annotation
mouse4302
annotate
affy
Annotation
mouse4302
annotate
affy
updated 11.2 years ago by
James W. MacDonald
65k • written 11.2 years ago by
hsharm03@students.poly.edu
▴ 180
0
votes
3
replies
1.8k
views
error and warning message with blocked samples with Limma
GO
Cancer
mouse4302
limma
GO
Cancer
mouse4302
limma
updated 11.0 years ago by
Gordon Smyth
50k • written 11.0 years ago by
Richard Friedman
★ 2.0k
0
votes
2
replies
1.1k
views
namespace error with goProfiles package
GO
mouse4302
goProfiles
GO
mouse4302
goProfiles
updated 15.8 years ago by
Alex Sanchez
▴ 20 • written 15.8 years ago by
Straubhaar, Juerg
▴ 300
0
votes
2
replies
1.3k
views
Problem with Annotation of Mouse4302.db in simpleaffy
Annotation
mouse4302
simpleaffy
GLAD
Annotation
mouse4302
simpleaffy
GLAD
updated 15.2 years ago by
James W. MacDonald
65k • written 15.2 years ago by
Marietta Herrmann
▴ 40
0
votes
2
replies
926
views
Duplicate probesets in mouse4302
mouse4302
mouse4302
updated 15.2 years ago by
Henrik Bengtsson
★ 2.4k • written 15.2 years ago by
Paul Geeleher
★ 1.3k
0
votes
2
replies
939
views
annotation on mouse4302
Annotation
mouse4302
Annotation
mouse4302
updated 16.5 years ago by
Steffen
▴ 500 • written 16.5 years ago by
Mayte Suarez-Farinas
▴ 510
0
votes
2
replies
1.5k
views
Affymetrix mouse 430_2 array - annotation problem
Annotation
mouse4302
annotate
Annotation
mouse4302
annotate
updated 9.7 years ago by
James W. MacDonald
65k • written 9.7 years ago by
Rao,Xiayu
▴ 550
3
votes
2
replies
1.5k
views
Trouble getting probe ID info from mouse4302.db annotation package with a specific RefSeq ID.
annotationdbi
mouse4302
affymetrixchip
annotationdata
R
updated 8.4 years ago by
James W. MacDonald
65k • written 8.4 years ago by
koreebay
• 0
0
votes
2
replies
987
views
moe430v2 annotation package?
Annotation
GO
mouse4302
cdf
probe
Annotation
GO
mouse4302
cdf
probe
updated 18.9 years ago by
John Zhang
★ 2.9k • written 18.9 years ago by
Fatima Nunez
▴ 30
0
votes
2
replies
1.2k
views
BiomaRt: getLDS keeps returning NULL
mouse4302
probe
affy
biomaRt
mouse4302
probe
affy
biomaRt
updated 11.2 years ago by
Steffen Durinck
▴ 540 • written 11.2 years ago by
Steven
▴ 110
0
votes
2
replies
713
views
Question about the appropriate uniververse for GOHyperG or hyperGtable
GO
mouse4302
probe
GO
mouse4302
probe
updated 17.8 years ago by
James W. MacDonald
65k • written 17.8 years ago by
Scott Ochsner
▴ 300
0
votes
1
reply
864
views
Annaffy problem loading metadata
mouse4302
annaffy
mouse4302
annaffy
17.9 years ago
Bornman, Daniel M
▴ 110
0
votes
1
reply
1.5k
views
Error message using arrayweights
GO
Cancer
mouse4302
KEGGREST
GO
Cancer
mouse4302
KEGGREST
updated 10.3 years ago by
Matthew Ritchie
▴ 1000 • written 10.3 years ago by
Richard Friedman
▴ 80
0
votes
1
reply
825
views
Access to Affy chip annotation data in affylmGUI
mouse4302
affylmGUI
mouse4302
affylmGUI
updated 18.2 years ago by
Seth Falcon
★ 7.4k • written 18.2 years ago by
Lee Parry
▴ 10
0
votes
1
reply
1.0k
views
filtering in GSEABase package
GO
hgu95av2
mouse4302
PROcess
Category
GO
hgu95av2
mouse4302
PROcess
Category
updated 14.0 years ago by
James F. Reid
▴ 610 • written 14.0 years ago by
jason0701
▴ 190
0
votes
1
reply
889
views
Multiple genes per probeset
Annotation
Cancer
mouse4302
annaffy
ASSIGN
Annotation
Cancer
mouse4302
annaffy
ASSIGN
updated 13.9 years ago by
James W. MacDonald
65k • written 13.9 years ago by
Richard Friedman
★ 2.0k
0
votes
1
reply
795
views
question about CDF file
mouse4302
cdf
mouse4302
cdf
updated 13.8 years ago by
Sean Davis
21k • written 13.8 years ago by
jchl tu
▴ 10
0
votes
1
reply
784
views
Biocore Data Team : package mouse4302.db bug
mouse4302
mouse4302
updated 13.1 years ago by
Marc Carlson
★ 7.2k • written 13.1 years ago by
Vojtech Kulvait
▴ 30
0
votes
1
reply
3.5k
views
KEGG pathway heat map
mouse4302
limma
mouse4302
limma
updated 11.9 years ago by
Felipe Antonio Riveroll Aguirre
▴ 10 • written 11.9 years ago by
Felipe Riveroll Aguirre
▴ 30
0
votes
1
reply
2.3k
views
Limma makeContrasts - incorporating known confounder
mouse4302
limma
mouse4302
limma
updated 10.3 years ago by
Bernd Klaus
▴ 610 • written 10.3 years ago by
Ed Mountjoy
▴ 10
0
votes
0
replies
933
views
mouse4302
Annotation
mouse4302
probe
affy
Annotation
mouse4302
probe
affy
17.8 years ago
Nianhua Li
▴ 870
0
votes
0
replies
762
views
[Fwd: Re: Duplicate probesets in mouse4302]
mouse4302
cdf
mouse4302
cdf
15.2 years ago
Naira Naouar
▴ 40
0
votes
0
replies
870
views
affymetrix annotation
Annotation
mouse4302
affy
Annotation
mouse4302
affy
13.2 years ago
arne.mueller@novartis.com
▴ 200
0
votes
0
replies
851
views
Moe430A and Moe430B join
moe430a
moe430b
mouse4302
gcrma
marray
moe430a
moe430b
mouse4302
gcrma
marray
15.7 years ago
Matyas Flemr
▴ 10
0
votes
0
replies
787
views
gseattperm return all NA
mouse4302
Category
mouse4302
Category
15.5 years ago
Saroj Mohapatra
▴ 450
0
votes
0
replies
797
views
only 9-digit refseq IDs when using custom CDF for mouse4302 array
GO
mouse4302
cdf
affy
GO
mouse4302
cdf
affy
14.5 years ago
Jarek Bryk
▴ 110
0
votes
0
replies
844
views
mouse4302.db mapping discrepancies between as.list() and select()
r
mouse4302
gene ontology
8.1 years ago
mark614
• 0
42 results • Page
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Recent ...
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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