Showing : msa • reset
9
votes
14
replies
2.2k
views
msa package installation problem
msa
updated 5.4 years ago by ▴ 10 • written 5.5 years ago by ▴ 120
8
votes
8
replies
1.4k
views
msa compilation failure - multiple definition of `GC_jmp_buf' in gc-7.2
software error msa
updated 8 months ago by ▴ 290 • written 24 months ago by ▴ 40
8
votes
14
replies
8.0k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa msaprettyprint() fasta
updated 5.1 years ago by • 0 • written 5.4 years ago by ▴ 50
4
votes
5
replies
1.2k
views
Can't install msa on FreeBSD
software error FreeBSD msa
4.9 years ago spcohen2 ▴ 20
3
votes
2
replies
1.2k
views
Installation of MSA package fails
MSA package installation software error compilation error
updated 4.6 years ago by ▴ 290 • written 4.6 years ago by ▴ 10
2
votes
1
reply
913
views
Outputting a multiple alignment to file error: could not find function write.XStringSet
msa
updated 5.4 years ago by ▴ 290 • written 5.4 years ago by ▴ 10
2
votes
2
replies
2.1k
views
How to get msa output in fasta format
msa msaprettyprint()
updated 4.2 years ago by ▴ 290 • written 4.2 years ago by • 0
2
votes
9
replies
2.1k
views
msa alignement: sorted sequences by sequence name
msa alignement output sorted
5.4 years ago Olorin ▴ 50
2
votes
2
replies
1.6k
views
Error with MSA package - could not find symbol "recursive"
msa
updated 5.3 years ago by 25k • written 5.3 years ago by ▴ 10
2
votes
5
replies
1.1k
views
Multiple Sequence Alignment using DNA sequence
msa decipher
5.1 years ago bbista91 ▴ 10
2
votes
2
replies
1.2k
views
msa: How to obtain a subset of an alignment
msa Biostrings MultipleAlignment
updated 4.8 years ago by ▴ 290 • written 4.8 years ago by ▴ 10
2
votes
3
replies
1.0k
views
running msa (msa) aborts R session
msa alignment r software error
updated 4.6 years ago by ▴ 290 • written 4.6 years ago by • 0
2
votes
11
replies
2.8k
views
How do I extract the complete MsaAAMultipleAlignment object to a file
msaprettyprint() msa multiplealignment export
updated 4.5 years ago by ▴ 290 • written 4.5 years ago by ★ 1.5k
2
votes
2
replies
576
views
seqfault wiht msa
msa segfault
4.2 years ago jmh5ad ▴ 20
1
vote
1
reply
3.4k
views
Using msa msaPrettyPrint(): issues with latex
msa latex msaPrettyPrint()
5.4 years ago Olorin ▴ 50
1
vote
6
replies
1.1k
views
MSA package fails to be installed - installation of package ‘msa’ had non-zero exit status
msa MultipleSequenceAlignment
updated 14 days ago by • 0 • written 15 months ago by • 0
1
vote
3
replies
1.0k
views
msaprettyprint error in R
msa
updated 19 months ago by ▴ 290 • written 22 months ago by • 0
1
vote
1
reply
331
views
Error using r msa::msaClustalW in parallel
software error msa
updated 2.4 years ago by ▴ 290 • written 2.4 years ago by ▴ 10
1
vote
1
reply
352
views
Msa package clustal-omega
msa
updated 6 months ago by ▴ 180 • written 6 months ago by • 0
1
vote
2
replies
815
views
msaPrettyPrint cannot handle long sequences?
msa msaprettyprint() multiple sequence alignment
5.4 years ago map2085 ▴ 40
1
vote
2
replies
640
views
Package for custom visualization of multiple sequence alignment
MSA visualization
updated 3.7 years ago by ▴ 20 • written 3.7 years ago by • 0
1
vote
2
replies
760
views
untranslate AAstringset {Biostrings} or MsaAAMultipleAlignment {msa}
biostrings msa
4.9 years ago multipleseqs • 0
1
vote
2
replies
424
views
What is the '?' in the result of R package 'msa' function 'msa'?
MSA R Multiple sequence alignment consensus sequence
updated 3.2 years ago by ▴ 20 • written 3.2 years ago by • 0
0
votes
1
reply
342
views
Difficulty with msaConvert function in R package
ape msa
updated 12 weeks ago by ▴ 290 • written 7 months ago by • 0
0
votes
1
reply
1.4k
views
Seeking help deploying Shiny application to RStudio Connect with Bioconductor package
Rstudio Connect msa bios2mds BiocManager Bioconductor
3.1 years ago morlenrp • 0
0
votes
1
reply
883
views
msa memory limitation
msa
updated 6.0 years ago by ▴ 290 • written 6.1 years ago by ▴ 40
0
votes
3
replies
934
views
installation failed when trying msa
msa
updated 5.8 years ago by ▴ 290 • written 5.8 years ago by • 0
0
votes
1
reply
1.2k
views
Error: could not find function "msaConvert"
msa software error
updated 5.7 years ago by ▴ 290 • written 5.7 years ago by • 0
0
votes
1
reply
708
views
How to draw phylogeny tree for long genomes? ('msa' taking much time)
msa phylogenetic
updated 5.6 years ago by ▴ 290 • written 5.6 years ago by ▴ 50
0
votes
0
replies
838
views
Using readAAMultipleAlignment to parse CMFinder Stockholm format alignments
biostrings stockholm msa cmfinder
5.5 years ago Keith Hughitt ▴ 170
0
votes
1
reply
801
views
Error in .Primitive("c")(<S4 object of class "IRanges">) : could not find symbol "recursive" in environment of the generic function running msa
msa iranges
updated 4.5 years ago by ▴ 290 • written 4.5 years ago by • 0
0
votes
1
reply
835
views
Status 1 error when using msaPrettyPrint() to make pdfs with MsaAAMultipleAlignment
msaprettyprint() latex pdf msa
updated 4.5 years ago by ▴ 290 • written 4.5 years ago by • 0
0
votes
1
reply
475
views
Defining populations in a msaClustalOmega alignment
msa
4.1 years ago cav3gh • 0
0
votes
4
replies
641
views
Error: could not find function "msaConvert"
msa
updated 4.0 years ago by ▴ 290 • written 4.0 years ago by • 0
0
votes
9
replies
961
views
visualizing alignment without realignment
msa alignment visualization
updated 3.4 years ago by 25k • written 3.4 years ago by • 0
0
votes
1
reply
449
views
Can any of the existing `MSA` packages be used/adapted to visualize a pre-aligned fasta or tsv file (e.g., `kalign` output)?
msa phylogeny
updated 3.1 years ago by ▴ 20 • written 3.2 years ago by • 0
0
votes
3
replies
482
views
Align a list of DNA sequence, extract only positions with SNPs for conpact view?
msa Biostrings
updated 2.2 years ago by ▴ 290 • written 2.2 years ago by ▴ 70
0
votes
6
replies
1.0k
views
msa: object 'msaClustalW' of mode 'function' was not found
msa
updated 22 months ago by ▴ 290 • written 22 months ago by • 0
0
votes
0
replies
308
views
msa: cannot load library silently
msa
22 months ago richel • 0
0
votes
3
replies
619
views
DECIPHER save alignement in outputs
msa decipher output prettyPrint
updated 22 months ago by ▴ 290 • written 22 months ago by • 0
0
votes
0
replies
168
views
[Function Request]converts a AA-based fasta alignment (that includes aa fasta sequences of different strains) into a vcf file
msa
20 months ago yeli7068 • 0
0
votes
0
replies
123
views
Can I quantify the number of mismatches post alignment?
msa
7 months ago Field -Ye • 0
0
votes
1
reply
366
views
msaprettyprint
msa prettyprint
updated 13 months ago by ▴ 290 • written 13 months ago by • 0
43 results • Page 1 of 1
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Answer: Seeking help in multifactor differential gene expression analysis using DESeq2. by swbarnes2 ★ 1.1k
Those look like different results to me. It's not at all clear why you are so sure it's wrong. Have you eyeballed to expression of those …
Answer: bioMart Sscrofa_gene_ensembl getBM() paralogues ERROR by Malcolm Cook ★ 1.6k
You have many more packages loaded than needed for a minimal example. I bet will work in a new session since your example works in my han…
Comment: treeio installation problem by an.gorohovski • 0
Get the released version from Bioconductor: ## try http:// if https:// URLs are not supported if (!requireNamespace("BiocManager", quietly…
Comment: cellCounts() function floating point error by J-E • 0
Thanks for your patience. There was an object 'cellCounts' in my workspace that was masking the most updated function from Rsubread 2.10.4.…
Comment: converting position from '-' strand to '+' strand by analeonpalacio ▴ 10
Hi Hervé, Thanks for the explanation. I am a bit confused about the conventions used by Ensembl. In some cases (insertions), the coordinate…
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how do singleton samples contribute to dispersion estimate in DESeq2?
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Answer: Combine GRanges(List) to a single GRanges with unified breakpoints
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