Showing : msa • reset
9
votes
14
replies
3.3k
views
msa package installation problem
msa
updated 7.2 years ago by ▴ 10 • written 7.3 years ago by ▴ 120
8
votes
14
replies
11k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa msaprettyprint() fasta
updated 6.9 years ago by • 0 • written 7.2 years ago by ▴ 50
2
votes
11
replies
5.1k
views
How do I extract the complete MsaAAMultipleAlignment object to a file
msaprettyprint() msa multiplealignment export
updated 6.3 years ago by ▴ 290 • written 6.3 years ago by ★ 1.5k
2
votes
9
replies
3.2k
views
msa alignement: sorted sequences by sequence name
msa alignement output sorted
7.2 years ago Olorin ▴ 50
0
votes
9
replies
1.9k
views
visualizing alignment without realignment
msa alignment visualization
updated 5.1 years ago by 25k • written 5.1 years ago by • 0
8
votes
8
replies
2.6k
views
msa compilation failure - multiple definition of `GC_jmp_buf' in gc-7.2
software error msa
updated 2.5 years ago by ▴ 290 • written 3.8 years ago by ▴ 40
0
votes
7
replies
2.8k
views
msa: object 'msaClustalW' of mode 'function' was not found
msa
updated 16 months ago by ▴ 290 • written 3.6 years ago by • 0
1
vote
7
replies
3.0k
views
MSA package fails to be installed - installation of package ‘msa’ had non-zero exit status
msa MultipleSequenceAlignment
updated 13 months ago by • 0 • written 3.1 years ago by • 0
4
votes
5
replies
1.8k
views
Can't install msa on FreeBSD
software error FreeBSD msa
6.7 years ago spcohen2 ▴ 20
2
votes
5
replies
1.8k
views
Multiple Sequence Alignment using DNA sequence
msa decipher
6.9 years ago bbista91 ▴ 10
2
votes
4
replies
2.1k
views
running msa (msa) aborts R session
msa alignment r software error
written 6.4 years ago by • 0
0
votes
4
replies
1.2k
views
Error: could not find function "msaConvert"
msa
updated 5.8 years ago by ▴ 290 • written 5.8 years ago by • 0
0
votes
3
replies
1.3k
views
Align a list of DNA sequence, extract only positions with SNPs for conpact view?
msa Biostrings
updated 4.0 years ago by ▴ 290 • written 4.0 years ago by ▴ 80
0
votes
3
replies
1.5k
views
installation failed when trying msa
msa
updated 7.5 years ago by ▴ 290 • written 7.6 years ago by • 0
0
votes
3
replies
1.6k
views
DECIPHER save alignement in outputs
msa decipher output prettyPrint
updated 3.6 years ago by ▴ 290 • written 3.6 years ago by • 0
1
vote
3
replies
2.5k
views
msaprettyprint error in R
msa
updated 3.4 years ago by ▴ 290 • written 3.7 years ago by • 0
1
vote
2
replies
1.3k
views
msaPrettyPrint cannot handle long sequences?
msa msaprettyprint() multiple sequence alignment
7.2 years ago map2085 ▴ 40
2
votes
2
replies
2.0k
views
Error with MSA package - could not find symbol "recursive"
msa
updated 7.1 years ago by 25k • written 7.1 years ago by ▴ 10
1
vote
2
replies
1.2k
views
untranslate AAstringset {Biostrings} or MsaAAMultipleAlignment {msa}
biostrings msa
6.7 years ago multipleseqs • 0
2
votes
2
replies
2.2k
views
msa: How to obtain a subset of an alignment
msa Biostrings MultipleAlignment
updated 6.6 years ago by ▴ 290 • written 6.6 years ago by ▴ 10
3
votes
2
replies
1.9k
views
Installation of MSA package fails
MSA package installation software error compilation error
updated 6.4 years ago by ▴ 290 • written 6.4 years ago by ▴ 10
2
votes
2
replies
1.1k
views
seqfault wiht msa
msa segfault
6.0 years ago jmh5ad ▴ 40
2
votes
2
replies
3.4k
views
How to get msa output in fasta format
msa msaprettyprint()
updated 6.0 years ago by ▴ 290 • written 6.0 years ago by • 0
1
vote
2
replies
1.2k
views
Package for custom visualization of multiple sequence alignment
MSA visualization
updated 5.5 years ago by ▴ 20 • written 5.5 years ago by • 0
1
vote
2
replies
1.0k
views
What is the '?' in the result of R package 'msa' function 'msa'?
MSA R Multiple sequence alignment consensus sequence
updated 5.0 years ago by ▴ 20 • written 5.0 years ago by • 0
0
votes
2
replies
574
views
msa Installation failed - please help
Install msa
11 months ago Ido • 0
0
votes
2
replies
196
views
Error in msaFun Cannot open input file. No alignment!
msa
written 4 weeks ago by ▴ 30
0
votes
1
reply
369
views
Cant post a bug report
msa
updated 3 months ago by ▴ 50 • written 8 months ago by • 0
2
votes
1
reply
1.4k
views
Outputting a multiple alignment to file error: could not find function write.XStringSet
msa
updated 7.2 years ago by ▴ 290 • written 7.2 years ago by ▴ 10
0
votes
1
reply
730
views
Error installing package msa on macOS Monterey 12.6 arm64
msa arm64
18 months ago lisa.a.ouellette • 0
1
vote
1
reply
1.3k
views
Msa package clustal-omega
msa
updated 2.3 years ago by ▴ 180 • written 2.3 years ago by • 0
0
votes
1
reply
1.1k
views
msaprettyprint
msa prettyprint
updated 2.9 years ago by ▴ 290 • written 2.9 years ago by • 0
0
votes
1
reply
1.1k
views
Difficulty with msaConvert function in R package
ape msa
updated 2.0 years ago by ▴ 290 • written 2.4 years ago by • 0
0
votes
1
reply
1.3k
views
Error in .Primitive("c")(<S4 object of class "IRanges">) : could not find symbol "recursive" in environment of the generic function running msa
msa iranges
updated 6.3 years ago by ▴ 290 • written 6.3 years ago by • 0
0
votes
1
reply
1.4k
views
Status 1 error when using msaPrettyPrint() to make pdfs with MsaAAMultipleAlignment
msaprettyprint() latex pdf msa
updated 6.3 years ago by ▴ 290 • written 6.3 years ago by • 0
0
votes
1
reply
869
views
Defining populations in a msaClustalOmega alignment
msa
5.9 years ago cav3gh • 0
1
vote
1
reply
4.6k
views
Using msa msaPrettyPrint(): issues with latex
msa latex msaPrettyPrint()
7.2 years ago Olorin ▴ 50
0
votes
1
reply
1.1k
views
Can any of the existing `MSA` packages be used/adapted to visualize a pre-aligned fasta or tsv file (e.g., `kalign` output)?
msa phylogeny
updated 4.9 years ago by ▴ 20 • written 5.0 years ago by • 0
1
vote
1
reply
1.2k
views
Error using r msa::msaClustalW in parallel
software error msa
updated 4.2 years ago by ▴ 290 • written 4.2 years ago by ▴ 10
0
votes
1
reply
1.0k
views
How to draw phylogeny tree for long genomes? ('msa' taking much time)
msa phylogenetic
updated 7.4 years ago by ▴ 290 • written 7.4 years ago by ▴ 50
0
votes
1
reply
1.7k
views
Error: could not find function "msaConvert"
msa software error
updated 7.5 years ago by ▴ 290 • written 7.5 years ago by • 0
0
votes
1
reply
1.4k
views
msa memory limitation
msa
updated 7.8 years ago by ▴ 290 • written 7.9 years ago by ▴ 40
0
votes
1
reply
2.5k
views
Seeking help deploying Shiny application to RStudio Connect with Bioconductor package
Rstudio Connect msa bios2mds BiocManager Bioconductor
4.9 years ago morlenrp • 0
0
votes
0
replies
286
views
msa package Error in .local(x, ...) : consensus matrix 'x' is not in proper format
msa
9 months ago Yang • 0
0
votes
0
replies
496
views
[Function Request]converts a AA-based fasta alignment (that includes aa fasta sequences of different strains) into a vcf file
msa
3.4 years ago yeli7068 • 0
0
votes
0
replies
460
views
adding peptides to a multiple sequence alignment
msa IRanges Biostrings
15 months ago Mario Dejung • 0
0
votes
0
replies
1.2k
views
Using readAAMultipleAlignment to parse CMFinder Stockholm format alignments
biostrings stockholm msa cmfinder
7.3 years ago Keith Hughitt ▴ 180
0
votes
0
replies
562
views
Can I quantify the number of mismatches post alignment?
msa
2.4 years ago Field -Ye • 0
0
votes
0
replies
678
views
Edit alignment in msa
alig msa Alignment
18 months ago Luis • 0
0
votes
0
replies
763
views
msa: cannot load library silently
msa
3.6 years ago richel • 0
50 results • Page 1 of 1
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Answer: Why p value inconsistent when using different number of pathway score? by ATpoint ★ 4.0k
Same answer as here: https://support.bioconductor.org/p/9157606/ Adding or removing data (samples, genes, pathways, observations...) chang…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Votes
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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