Bioconductor Msigdb

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951

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GSEABase fgsea msigdb GeneSetEnrichment

7 months ago Assa Yeroslaviz ★ 1.5k

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436

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msigdb fgsea msig

10 months ago Tanvi • 0

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824

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geneset GeneSetEnrichment msigdb

13 months ago Seongsu • 0

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956

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msigdb gmt GSEA

written 13 months ago by Georg • 0

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3.8k

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ssgsea GSVA biotype proteincoding msigdb

updated 7 months ago by tifaGis • 0 • written 17 months ago by snijesh ▴ 200

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2.2k

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msigdb GSEABase GSVA

updated 3.1 years ago by Robert Castelo ★ 3.4k • written 3.1 years ago by forlani.luca • 0

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2.3k

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gseabase msigdb genesetcollection Tutorial

written 6.9 years ago by t.kuilman ▴ 170

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5.1k

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clusterprofiler GSEA MSIGDB

updated 7.1 years ago by Guangchuang Yu ★ 1.2k • written 7.1 years ago by thomasjenner333 • 0

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1.6k

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limma romer msigdb

updated 9.7 years ago by James W. MacDonald 68k • written 9.7 years ago by Jon Manning ▴ 40

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1.5k

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category gostats msigdb hypergeometric test

9.7 years ago petyuk ▴ 70

10 results • Page 1 of 1

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Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Votes

Answer: CluserProfiler message "No gene can be mapped"

A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

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