Showing : msigdb • reset
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Tutorial: Update gene symbols in GeneSetCollection
gseabase msigdb genesetcollection Tutorial
3.3 years ago t.kuilman 170
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Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler GSEA MSIGDB
updated 3.6 years ago by ★ 1.2k • written 3.6 years ago by • 0
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2
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Update to MSigDB derivates for romer()?
limma romer msigdb
updated 6.1 years ago by 58k • written 6.2 years ago by ▴ 40
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hyperGTest for MSigDB categories
category gostats msigdb hypergeometric test
6.2 years ago petyuk ▴ 70
4 results • Page 1 of 1
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Comment: Error: package or namespace load failed for ‘clusterProfiler’: object ‘get_fun_f by Vince Schulz ▴ 60
This works for me. ``` packageurl <- "https://cran.r-project.org/src/contrib/Archive/rvcheck/rvcheck_0.1.8.tar.gz" install.packages(packa…
Comment: Interpretation of Log 2 fold change by adeler001 • 0
Thank you much James
Answer: Getting Bioconductor genome wide annotation for Candida auris by James W. MacDonald 58k
There isn't an `OrgDb` for C. auris on the `AnnotationHub`, so you will need to generate one yourself, using `makeOrgPackageFromNCBI` in th…
Comment: Getting Bioconductor genome wide annotation for Candida auris by Javan Okendo • 0
@James I am using clusterProfiler: https://learn.gencore.bio.nyu.edu/rna-seq-analysis/gene-set-enrichment-analysis/ for the enrichment anal…
Comment: Error: package or namespace load failed for ‘clusterProfiler’: object ‘get_fun_f by Chan • 0
Hi, I'm having a same problem with the 4.0.3 version of R. How did you download the older version 0.1.3 of rvcheck? I tried multiple ways.
Votes
Comment: Getting Bioconductor genome wide annotation for Candida auris
Answer: Getting Bioconductor genome wide annotation for Candida auris
Answer: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Answer: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m31) is not TRUE
Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m31) is not TRUE
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Popular Question to James W. MacDonald 58k
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