Bioconductor Msigdb

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limma romer msigdb

updated 7.8 years ago by James W. MacDonald 63k • written 7.8 years ago by Jon Manning ▴ 40

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3.0k

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clusterprofiler GSEA MSIGDB

updated 5.2 years ago by Guangchuang Yu ★ 1.2k • written 5.2 years ago by thomasjenner333 • 0

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555

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msigdb GSEABase GSVA

updated 14 months ago by Robert Castelo ★ 3.0k • written 14 months ago by forlani.luca • 0

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1.1k

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category gostats msigdb hypergeometric test

7.8 years ago petyuk ▴ 70

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1.4k

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gseabase msigdb genesetcollection Tutorial

4.9 years ago t.kuilman 170

5 results • Page 1 of 1

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Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Anna ▴ 20

A no I never referred to transcriptomic data when I was talking about "standard procedure" I was referring to the way we analyze longitudin…

Answer: BiocManager Package installs by shepherl 3.5k

We don't control the mirrors. You would have to contact the maintainer of the mirror you are using. Likely the maintainer of the mirror mi…

Comment: No compilation on Windows y compilation on linux by Franck RICHARD • 0

Thanks shepherl

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k

Perhaps you are thinking of data analyses where the dependent variable is something other than expression itself. In the context of gene e…

Comment: Interpret plot from DiffBind by Chris • 0

If I want to find genes that are more open in diseased than control, I can filter out peaks that have highest log2Fold change like this, is…

Votes

A: Ranges from a fasta file

Answer: NA transcript values in my Txdb

Comment: Interpret plot from DiffBind

Answer: Use with_go along with other filters in getBM function

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Scholar to Mike Smith ★ 6.0k