Biostar Msigdb

Showing : msigdb • reset

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2.6k

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clusterprofiler GSEA MSIGDB

updated 4.9 years ago by Guangchuang Yu ★ 1.2k • written 4.9 years ago by thomasjenner333 • 0

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1.3k

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gseabase msigdb genesetcollection Tutorial

4.6 years ago t.kuilman 170

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1.1k

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limma romer msigdb

updated 7.4 years ago by James W. MacDonald 62k • written 7.5 years ago by Jon Manning ▴ 40

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982

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category gostats msigdb hypergeometric test

7.5 years ago petyuk ▴ 70

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364

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msigdb GSEABase GSVA

updated 10 months ago by Robert Castelo ★ 3.0k • written 10 months ago by forlani.luca • 0

5 results • Page 1 of 1

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Comment: AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site) by liuchangbio ▴ 10

Hi, Thank you for your reply. I have tried to follow the advice you gave, but it still does not work. This does not look like an easy E…

Comment: TCGA: clinical data and expression data by sharifnstu1203002m • 0

Hello, I am in the same problem. I downloaded "transcriptome profiling" data of TCGA by using the Bioconductor package. I get my gene expr…

Comment: How to normalize long-read RNA-seq data for comparison with short-reads by Jonathan Göke ▴ 40

Great to hear that you are using Bambu. Yes, I think that part of your question does not have one correct answer, there are many ways in wh…

Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R by Gordon Smyth 47k

Choosing which samples to normalize together is not dependent on library size but rather on (1) whether the tissue samples are comparable a…

Comment: Atena package - error (new user) by lalanis1 • 0

Thanks a lot, Calvo. Will run my files with revised version soon! Best regards, Lalani

Votes

Comment: How to normalize long-read RNA-seq data for comparison with short-reads

Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R

C: Can't install TopmedPipeline Package

Comment: Question about GWASTools gdsSubset

Comment: How to normalize long-read RNA-seq data for comparison with short-reads

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Scholar to James W. MacDonald 62k

Teacher to Michael Love 39k