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News: 2024 May Institute on computation and statistics for mass spectrometry and proteomics
MSstats MSstatsTMT MSstatsShiny MSstatsPTM
3 months ago kohler.d • 0
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Issues setting background in STRINGdb
STRINGdb MSstats
10 months ago samsiljee • 0
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Help about MSstats in skyline
Skyline.MS MSstats R
4.0 years ago pokhf123 • 0
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Memory usage and SWATH2stats
swath dia msstats swath2stats
updated 5.5 years ago by • 0 • written 5.5 years ago by • 0
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MaxQuant to MSstat question
msstats
5.5 years ago yasaman.jami • 0
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Cannot install and load MSstats package
proteomics massspectrometry msstats
updated 6.1 years ago by 1.6k • written 6.1 years ago by • 0
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News: LAST CHANCE: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
news proteomics course training msstats News
6.2 years ago mnchoi67 ▴ 40
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News: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
bioconductor training course msstats proteomics News
6.3 years ago mnchoi67 ▴ 40
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MSstats changes to dataprocess
MSstats
updated 6.3 years ago by ▴ 40 • written 6.3 years ago by • 0
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object 'feaMeasurements' not found for MSstats
R msstats
updated 6.3 years ago by • 0 • written 6.4 years ago by ▴ 10
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MSstats package update
MSstats
updated 6.5 years ago by 3.8k • written 6.5 years ago by • 0
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
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C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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