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Comment: DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2?
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Giulia
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Hi Rory,
Thank you for your quick reply and advice on the matter.
The following are the MAplots for the analysis using the background=TRU…
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ATpoint
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I asked the same some years back: https://support.bioconductor.org/p/p134551/#p134561
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Could you perhaps comment one why you would want to include non-biological "unrelated" channels such as time and event length for clusterin…
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It is unusual to see such a big difference between the two analysis methods, although it is more likely when you have only two replicates d…
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You need to call `dba.normalize()` twice, first to establish the normalization calculations, and the second time to retrieve them:
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