Bioconductor Multiplefactors

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DESeq2 DEG multiplefactors deseq2

updated 6.3 years ago by Steve Lianoglou ★ 13k • written 6.3 years ago by yura.song • 0

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DESeq2 MultipleFactors TimeSeriesExperiment

updated 3.4 years ago by Michael Love 43k • written 3.4 years ago by Maria • 0

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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k

I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by ATpoint ★ 5.0k

Yes, still it's not reproducible, yet hard to debug. I cannot reproduce myself either.

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…

Answer: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening in a clean install

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Comment: limpa analysis advice

Answer: When to use edgeR or limma

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