Showing : multtest • reset
0
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multtest problem...
multtest multtest
updated 19.0 years ago by ▴ 110 • written 19.0 years ago by ▴ 430
0
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7
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1.4k
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questions on results from mt.maxT (multtest)
multtest affy multtest affy
updated 19.2 years ago by ▴ 120 • written 19.2 years ago by ▴ 300
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6
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1.4k
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Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ★ 1.4k
0
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6
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3.3k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 16.7 years ago by ▴ 220 • written 16.7 years ago by ★ 2.2k
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5
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1.6k
views
getBioC v1.2.22 & [R] v1.6.2
annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets reposTools affy vsn
updated 21.1 years ago by ★ 3.9k • written 21.1 years ago by ▴ 70
0
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5
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1.5k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 890
0
votes
4
replies
1.9k
views
installation problem
Ruuid genefilter rhdf5 multtest affy graph Rgraphviz RBGL Ruuid genefilter rhdf5 affy
updated 20.6 years ago by 6.7k • written 20.6 years ago by ▴ 30
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4
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1.2k
views
Multtest
multtest multtest
updated 20.1 years ago by 65k • written 20.1 years ago by ▴ 120
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votes
4
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1.0k
views
problems with multtest
Annotation multtest Annotation multtest
updated 20.2 years ago by 65k • written 20.2 years ago by ★ 3.4k
0
votes
4
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1.2k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 17.5 years ago by 25k • written 17.5 years ago by ★ 2.2k
0
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3
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936
views
Limma then Annaffy?
multtest limma multtest limma
updated 18.3 years ago by 65k • written 18.3 years ago by ▴ 140
0
votes
3
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2.7k
views
mt.teststat
multtest DECIPHER multtest DECIPHER
updated 8.3 years ago by ▴ 20 • written 21.1 years ago by ▴ 220
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3
replies
3.3k
views
problem updating packages importing the package "MASS"
multtest multtest
updated 14.9 years ago by 21k • written 14.9 years ago by ▴ 830
0
votes
3
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967
views
passing my data to siggenes package
multtest siggenes multtest siggenes
updated 18.5 years ago by ▴ 900 • written 18.5 years ago by ▴ 140
0
votes
3
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836
views
multtest dependencies
Survival genefilter multtest reposTools Survival genefilter multtest reposTools
19.1 years ago Francois Pepin ★ 1.3k
0
votes
3
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1.2k
views
Webbioc error exprSet vs expressionSet
Preprocessing multtest webbioc Preprocessing multtest webbioc
16.1 years ago Balasubramanian Ganesan ▴ 70
0
votes
3
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907
views
defect in multtest.pdf
multtest multtest
updated 21.8 years ago by ★ 3.9k • written 21.8 years ago by ★ 1.4k
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3
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1.2k
views
GOstats hyperGTest question
Biobase annotate genefilter multtest graph Biobase annotate genefilter multtest graph
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ▴ 80
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votes
3
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1.3k
views
webbioc chicken
Microarray cdf probe multtest affy webbioc Microarray cdf probe multtest affy webbioc
updated 17.2 years ago by ▴ 870 • written 17.2 years ago by ▴ 20
0
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3
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1.3k
views
Questions about multtest
multtest multtest
updated 20.2 years ago by ▴ 550 • written 20.2 years ago by ★ 3.4k
0
votes
3
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3.3k
views
Installing genefilter
Microarray genefilter multtest Microarray genefilter multtest
updated 19.2 years ago by ▴ 300 • written 19.2 years ago by ▴ 20
0
votes
3
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2.0k
views
hyperGTest, KEGG
Annotation Pathways multtest siggenes RBGL GOstats Annotation Pathways multtest siggenes
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 80
0
votes
3
replies
2.0k
views
Situation of the legend in the plotPCA of the affycoretools library
GO Survival cdf annotate genefilter multtest affy graph limma RBGL GOstats Category GO
updated 17.6 years ago by 65k • written 17.6 years ago by ▴ 350
0
votes
3
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1.1k
views
Extracting expressions after a multtest procedure (part 2)
multtest multtest
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 70
0
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3
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986
views
class label
Normalization multtest Normalization multtest
updated 13.4 years ago by 25k • written 13.4 years ago by ▴ 170
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2
replies
1.4k
views
'Factorial Design' package question
Survival cdf multtest affy factDesign biomaRt Survival cdf multtest affy factDesign
15.9 years ago Glazko, Galina ▴ 350
0
votes
2
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829
views
subset eset by row broken
Survival rgu34a multtest affy Survival rgu34a multtest affy
18.0 years ago Kimpel, Mark W ▴ 890
0
votes
2
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1.2k
views
Problems encountered using affy in R
Biobase annotate genefilter multtest ROC tkWidgets affy vsn Biobase annotate genefilter
updated 21.2 years ago by 6.7k • written 21.2 years ago by ▴ 20
0
votes
2
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1.3k
views
problem with latest version of graph
GO annotate genefilter multtest affy graph Rgraphviz RBGL GOstats affyio affycoretools
17.9 years ago Kimpel, Mark W ▴ 890
0
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2
replies
3.5k
views
multtest and Cox regression
Regression multtest Regression multtest
updated 19.0 years ago by ▴ 10 • written 19.0 years ago by ▴ 140
4
votes
2
replies
5.9k
views
Adjust p-values of a matrix of p-values
multtest
updated 9.4 years ago by 50k • written 9.4 years ago by ▴ 250
0
votes
2
replies
959
views
Multtest Question!
multtest multtest
21.2 years ago Puhong Gao ▴ 20
0
votes
2
replies
1.3k
views
limma/multtest comparison question
multtest limma multtest limma
19.9 years ago Sean Davis 21k
0
votes
2
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1.5k
views
multtest different seed
multtest multtest
15.6 years ago Stefano Moretti ▴ 20
0
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2
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1.4k
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[altirriba@hotmail.com: Design in factDesign] (fwd)
multtest limma factDesign multtest limma factDesign
updated 20.1 years ago by ▴ 630 • written 20.1 years ago by ▴ 350
0
votes
2
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1.1k
views
help for siggene installation
Biobase multtest Biobase multtest
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 60
0
votes
2
replies
1.4k
views
Minimum expression threshold?
multtest affy multtest affy
updated 8 months ago by • 0 • written 20.7 years ago by ▴ 20
0
votes
2
replies
971
views
Multtest data problem....
multtest multtest
updated 21.9 years ago by ▴ 170 • written 21.9 years ago by ▴ 90
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2
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1.2k
views
imputing missing data for 70mer array platform, need advice
aCGH CGH multtest impute aCGH oligo aCGH CGH multtest impute aCGH oligo
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 50
0
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2
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857
views
mt.sample.label RGui: Rgui.exe - Application Error
multtest multtest
updated 20.8 years ago by 6.7k • written 20.8 years ago by ★ 1.4k
0
votes
2
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1.5k
views
problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
17.7 years ago Jenny Drnevich ★ 2.2k
0
votes
2
replies
1.0k
views
error with GOHyperG
drosophila2 cdf Biobase annotate genefilter multtest RBGL GOstats drosophila2 cdf RBGL
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ▴ 10
0
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2
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1.2k
views
About correlation tests between pairs of genes
multtest
updated 9.5 years ago by ★ 3.7k • written 9.5 years ago by ▴ 250
0
votes
1
reply
620
views
se.exprs/signficance analysis
multtest multtest
updated 21.0 years ago by ★ 2.3k • written 21.0 years ago by ▴ 340
0
votes
1
reply
738
views
Filtering and Multiple Testing
multtest multtest
updated 21.3 years ago by ★ 5.5k • written 21.3 years ago by ▴ 70
0
votes
1
reply
906
views
ReadAffy question
GO Ruuid DynDoc annotate genefilter multtest tkWidgets reposTools affy widgetTools limma
updated 18.3 years ago by 65k • written 18.3 years ago by ▴ 890
0
votes
1
reply
1.3k
views
[R] Why SAM has totally diffent results in R2.1.1 and R2.4.0
Microarray Genetics Survival multtest siggenes safe Microarray Genetics Survival multtest
updated 17.4 years ago by ▴ 900 • written 17.4 years ago by 25k
0
votes
1
reply
769
views
affy troubles
probe multtest affy probe multtest affy
20.5 years ago • updated 20.4 years ago peter robinson ▴ 300
0
votes
1
reply
1.7k
views
Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE GO Kidney hgu95av2 hu6800 rae230a cdf Biobase Ruuid DynDoc annotate edd multtest
updated 19.5 years ago by ★ 5.5k • written 19.5 years ago by ▴ 100
0
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1
reply
1.5k
views
Bioconductor Digest, Vol 31, Issue 7
Microarray Annotation Cancer probe multtest affy limma marray Microarray Annotation affy
18.6 years ago Shruti Subramaniam ▴ 30
50 results • Page 1 of 1
Recent ...
Replies
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
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