Showing : multtest • reset
4
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2
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5.9k
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Adjust p-values of a matrix of p-values
multtest
updated 9.4 years ago by 50k • written 9.4 years ago by ▴ 250
0
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2
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3.5k
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multtest and Cox regression
Regression multtest Regression multtest
updated 19.0 years ago by ▴ 10 • written 19.0 years ago by ▴ 140
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6
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3.3k
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how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 16.7 years ago by ▴ 220 • written 16.7 years ago by ★ 2.2k
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3
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3.3k
views
Installing genefilter
Microarray genefilter multtest Microarray genefilter multtest
updated 19.2 years ago by ▴ 300 • written 19.2 years ago by ▴ 20
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3
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3.3k
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problem updating packages importing the package "MASS"
multtest multtest
updated 14.9 years ago by 21k • written 14.9 years ago by ▴ 830
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3
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2.7k
views
mt.teststat
multtest DECIPHER multtest DECIPHER
updated 8.3 years ago by ▴ 20 • written 21.1 years ago by ▴ 220
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0
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2.5k
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Cox MTP question
Microarray Regression multtest Microarray Regression multtest
19.0 years ago kpollard ▴ 110
0
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9
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2.0k
views
multtest problem...
multtest multtest
updated 19.0 years ago by ▴ 110 • written 19.0 years ago by ▴ 430
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3
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2.0k
views
Situation of the legend in the plotPCA of the affycoretools library
GO Survival cdf annotate genefilter multtest affy graph limma RBGL GOstats Category GO
updated 17.6 years ago by 65k • written 17.6 years ago by ▴ 350
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3
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2.0k
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hyperGTest, KEGG
Annotation Pathways multtest siggenes RBGL GOstats Annotation Pathways multtest siggenes
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 80
0
votes
4
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1.9k
views
installation problem
Ruuid genefilter rhdf5 multtest affy graph Rgraphviz RBGL Ruuid genefilter rhdf5 affy
updated 20.6 years ago by 6.7k • written 20.6 years ago by ▴ 30
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1
reply
1.8k
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How do I get p-values from multtest?
multtest convert multtest convert
updated 19.5 years ago by ▴ 10 • written 19.5 years ago by ★ 3.4k
1
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0
replies
1.8k
views
DE analysis of PCR array [was: dataset dim for siggenes]
qPCR Normalization multtest limma siggenes
9.6 years ago • updated 7.3 years ago Gordon Smyth 50k
0
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1
reply
1.8k
views
Help with raw p-value
multtest multtest
updated 21.5 years ago by ▴ 170 • written 21.5 years ago by ▴ 70
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0
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1.7k
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how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
16.7 years ago Min Wook Kim ▴ 20
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0
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1.7k
views
Fwd: (adj.p.value & log2FC) or (B.value & log2FC)
multtest limma multtest limma
10.4 years ago debatosh das ▴ 10
0
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1
reply
1.7k
views
Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE GO Kidney hgu95av2 hu6800 rae230a cdf Biobase Ruuid DynDoc annotate edd multtest
updated 19.5 years ago by ★ 5.5k • written 19.5 years ago by ▴ 100
0
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1
reply
1.7k
views
Help with GSEA package
hu6800 cdf genefilter multtest affy gcrma siggenes annaffy GSEABase hu6800 cdf multtest
updated 13.4 years ago by 25k • written 13.4 years ago by ▴ 20
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5
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1.6k
views
getBioC v1.2.22 & [R] v1.6.2
annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets reposTools affy vsn
updated 21.1 years ago by ★ 3.9k • written 21.1 years ago by ▴ 70
0
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0
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1.5k
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peer review process/DATE CORRECTION
Biobase annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets affy AnnBuilder
22.1 years ago Vincent J. Carey, Jr. 6.7k
0
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5
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1.5k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 890
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1
reply
1.5k
views
Westfall and Young "maxT"
Cancer multtest Cancer multtest
updated 20.8 years ago by ▴ 170 • written 20.8 years ago by ▴ 10
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1
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1.5k
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problems : getting error : Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0010817" not found
multtest GOstats biomaRt multtest GOstats biomaRt
updated 14.3 years ago by 65k • written 14.3 years ago by ▴ 810
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2
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1.5k
views
multtest different seed
multtest multtest
15.6 years ago Stefano Moretti ▴ 20
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1
reply
1.5k
views
Bioconductor Digest, Vol 31, Issue 7
Microarray Annotation Cancer probe multtest affy limma marray Microarray Annotation affy
18.6 years ago Shruti Subramaniam ▴ 30
0
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2
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1.5k
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problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
17.7 years ago Jenny Drnevich ★ 2.2k
0
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1
reply
1.4k
views
Limma- Filtering After Statistical Analysis
genefilter multtest limma genefilter multtest limma
updated 15.2 years ago by 50k • written 15.2 years ago by ▴ 250
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7
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1.4k
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questions on results from mt.maxT (multtest)
multtest affy multtest affy
updated 19.2 years ago by ▴ 120 • written 19.2 years ago by ▴ 300
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6
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1.4k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ★ 1.4k
0
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1
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1.4k
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prefiltering genelist before LIMMA & cut-off paramter for getting DEGs from topT object.
multtest multtest
updated 10.4 years ago by ★ 13k • written 10.4 years ago by ★ 13k
0
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2
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1.4k
views
Minimum expression threshold?
multtest affy multtest affy
updated 8 months ago by • 0 • written 20.7 years ago by ▴ 20
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2
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1.4k
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[altirriba@hotmail.com: Design in factDesign] (fwd)
multtest limma factDesign multtest limma factDesign
updated 20.1 years ago by ▴ 630 • written 20.1 years ago by ▴ 350
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2
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'Factorial Design' package question
Survival cdf multtest affy factDesign biomaRt Survival cdf multtest affy factDesign
15.9 years ago Glazko, Galina ▴ 350
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0
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1.3k
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multtest MTP raw P values = 0
multtest multtest
16.2 years ago Timur Shtatland ▴ 30
0
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2
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1.3k
views
problem with latest version of graph
GO annotate genefilter multtest affy graph Rgraphviz RBGL GOstats affyio affycoretools
17.9 years ago Kimpel, Mark W ▴ 890
0
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0
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1.3k
views
error in loading affy (R 2.0), Thank you
Normalization GO Clustering moe430a moe430b probe Ruuid rhdf5 multtest affy graph limma
19.5 years ago Pintilie, Melania ▴ 50
0
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2
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1.3k
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limma/multtest comparison question
multtest limma multtest limma
19.9 years ago Sean Davis 21k
0
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1
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1.3k
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[altirriba@hotmail.com: Design in factDesign] (fwd)
multtest limma factDesign multtest limma factDesign
updated 20.0 years ago by ▴ 350 • written 20.1 years ago by ▴ 40
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1
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1.3k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
16.8 years ago Steven McKinney ▴ 310
0
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1
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1.3k
views
[R] Why SAM has totally diffent results in R2.1.1 and R2.4.0
Microarray Genetics Survival multtest siggenes safe Microarray Genetics Survival multtest
updated 17.4 years ago by ▴ 900 • written 17.4 years ago by 25k
0
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3
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1.3k
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Questions about multtest
multtest multtest
updated 20.2 years ago by ▴ 550 • written 20.2 years ago by ★ 3.4k
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3
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1.3k
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webbioc chicken
Microarray cdf probe multtest affy webbioc Microarray cdf probe multtest affy webbioc
updated 17.2 years ago by ▴ 870 • written 17.2 years ago by ▴ 20
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1
reply
1.3k
views
[R] problem loading affycoretools - solved!
Biobase Ruuid genefilter multtest graph limma gcrma matchprobes affyPLM RBGL simpleaffy
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ★ 2.2k
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0
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1.2k
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multtest: how to adjust multiple contrasts in a single run?
moe430a multtest affy limma moe430a multtest affy limma
14.8 years ago Guido Hooiveld ★ 3.9k
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3
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1.2k
views
GOstats hyperGTest question
Biobase annotate genefilter multtest graph Biobase annotate genefilter multtest graph
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ▴ 80
0
votes
4
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1.2k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 17.5 years ago by 25k • written 17.5 years ago by ★ 2.2k
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0
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1.2k
views
multtest Paired T-test
multtest multtest
19.1 years ago kpollard ▴ 110
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3
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1.2k
views
Webbioc error exprSet vs expressionSet
Preprocessing multtest webbioc Preprocessing multtest webbioc
16.1 years ago Balasubramanian Ganesan ▴ 70
0
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2
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1.2k
views
Problems encountered using affy in R
Biobase annotate genefilter multtest ROC tkWidgets affy vsn Biobase annotate genefilter
updated 21.2 years ago by 6.7k • written 21.2 years ago by ▴ 20
0
votes
2
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1.2k
views
About correlation tests between pairs of genes
multtest
updated 9.5 years ago by ★ 3.7k • written 9.5 years ago by ▴ 250
50 results • Page 1 of 1
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Replies
Answer: Citation for edgeR user guide by Gordon Smyth 50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp by clacarion • 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp by clacarion • 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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