Bioconductor Mutations

Showing : mutations • reset

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452

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virus pcr amplican mutations

14 months ago Sara • 0

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1.3k

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TCGA MAF GDC snp mutations

updated 4.9 years ago by Sean Davis 21k • written 4.9 years ago by mario.zanfardino ▴ 160

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944

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tcgabiolinks maf mutations

updated 7.1 years ago by Tiago Chedraoui Silva ▴ 260 • written 7.2 years ago by d r ▴ 150

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1.5k

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limma rnaseq mutations

updated 7.7 years ago by Aaron Lun ★ 28k • written 7.7 years ago by Nicolas Rosewick ▴ 10

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1.3k

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rnaseq pair-end reads mutations

updated 7.8 years ago by Jeff Leek ▴ 650 • written 7.8 years ago by H.Hasani • 0

5 results • Page 1 of 1

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

Votes

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Awards • All

Scholar to Peter Hickey ▴ 740