Biostar Nanoporernaseq

Showing : nanoporernaseq • reset

1

vote

1

reply

602

views

NanoporeRNASeq RNASeq

updated 14 months ago by James W. MacDonald 59k • written 14 months ago by sinanoori88 • 0

0

votes

0

replies

237

views

NanoporeRNASeq RNAdynamics RNAmodifications

12 months ago mattia pelizzola ▴ 200

2 results • Page 1 of 1

Recent ...

Replies

Comment: Subsetting operation on CompressedGRangesList object 'x' produces a result tha by Jiping Wang ▴ 70

Hi H. Do you have any clues what the bug or problem could be? thanks. Jiping

Answer: DESeq2 paired design: Differential list comparing fold changes by swbarnes2 ★ 1.0k

Sounds like you want interactions: http://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#interactions

Comment: TPM data Differential expression analysis by hnthirim ▴ 10

Hi @gordonsmyth, Question on your above answer: I have logTPM normalized data. Can I perform DE analysis using it on EdgeR, instead of in…

Comment: rtracklayer S.h by gibran • 0

Thanks, much appreciated. So I think this approach actually gets binaries and I'm not sure how to isolate the problem I was experiencing as…

Comment: DESeq2, Calculate the size factor by using median-of-ratio by KEREN • 0

Hi Michael, thank you for you reply. My concern here mainly focus on the high variances in samples of condition "mESC_mRNA_WT". I observed…

Votes

Comment: Case Studies Data Missing in Rsubread

Answer: rtracklayer S.h

Awards • All

Scholar to jared.andrews07 ▴ 30

Scholar to vanbelj ▴ 10

Scholar to James W. MacDonald 59k

Popular Question to Johannes Rainer ★ 1.9k