Bioconductor Nanostring

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1.9k

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NanoStringDiff NanoString nCounter DE analysis

updated 5 months ago by georgersmith • 0 • written 4.7 years ago by lim6432 ▴ 50

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711

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GSVA Normalization BatchEffect GSVAdata NanoString

15 months ago Zhijie • 0

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2.1k

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ExpressionSet Assay NanoString Error Data

updated 21 months ago by James W. MacDonald 65k • written 21 months ago by junli1988 • 0

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1.5k

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NanoNormIter DifferentialExpression Housekeeping DESeq2 NanoString

updated 2.3 years ago by Michael Love 41k • written 2.3 years ago by argonvibio • 0

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8.5k

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NanoString Differential Expressed Genes Analysis DESeq2

updated 2.3 years ago by Clara • 0 • written 4.7 years ago by lim6432 ▴ 50

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1.5k

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plotRLE Nanostring RUVSeq DESEQ2

2.8 years ago xiaofeiwang18266 ▴ 50

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1.6k

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RUV Nanostring RUV-III

updated 4.0 years ago by hermidalc ▴ 20 • written 4.7 years ago by raf4 ▴ 20

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1.5k

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deseq2 nanostring

4.4 years ago acs1990 ▴ 10

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972

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limma nanostring contrasts

updated 4.6 years ago by Gordon Smyth 50k • written 4.6 years ago by uridavid.akavia • 0

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1.4k

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GSVA Nanostring

5.8 years ago • updated 5.1 years ago SB • 0

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1.2k

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differential gene expression nanostring confounding factors

updated 5.4 years ago by James W. MacDonald 65k • written 5.4 years ago by Guillaume Robert • 0

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1.9k

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nanostringdiff nanostring NanoStringDiff

updated 5.9 years ago by James W. MacDonald 65k • written 5.9 years ago by casey.rimland ▴ 150

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5.4k

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deseq2 nanostring

updated 5.9 years ago by Michael Love 41k • written 5.9 years ago by casey.rimland ▴ 150

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1.1k

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deseq2 confounders nanostring rnaseq differential gene expression

updated 6.1 years ago by Michael Love 41k • written 6.1 years ago by kim.malek88 • 0

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1.3k

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nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

6.8 years ago c.kohler • 0

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3.4k

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deseq2 variancestabilizingtransformation nanostring

updated 7.0 years ago by Michael Love 41k • written 7.0 years ago by johnmcma ▴ 10

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nanostring normalization

8.6 years ago alakatos ▴ 130

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12k

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nanostring limma

updated 9.0 years ago by ker61 ▴ 20 • written 9.0 years ago by mali salmon ▴ 370

18 results • Page 1 of 1

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Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Votes

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

Answer: Cannabis OrgDb

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