Bioconductor Nanostringdiff

Showing : nanostringdiff • reset

votes

replies

805

views

NanoStringDiff clusterProfiler fgsea

10 months ago pg45863 ▴ 10

votes

replies

827

views

DESeq2 NanoStringDiff limma

11 months ago pg45863 ▴ 10

votes

613

views

GEOquery MicroarrayData Normalization Microarray NanoStringDiff

updated 14 months ago by James W. MacDonald 65k • written 14 months ago by Aleksandra • 0

votes

replies

504

views

NanoStringDiff

updated 16 months ago by James W. MacDonald 65k • written 16 months ago by Paraskevi • 0

votes

replies

541

views

DifferentialExpression NanoStringDiff

2.4 years ago sanrie10 • 0

votes

replies

1.5k

views

limma edgeR DESeq2 NanoStringDiff

updated 2.6 years ago by James W. MacDonald 65k • written 2.6 years ago by reberya • 0

votes

replies

957

views

Nan NanoStringDiff

2.8 years ago choijamts • 0

votes

replies

1.9k

views

NanoStringDiff NanoString nCounter DE analysis

updated 5 months ago by georgersmith • 0 • written 4.7 years ago by lim6432 ▴ 50

votes

replies

647

views

NanoStringDiff

3.1 years ago YM • 0

vote

887

views

Bioconductor Transcriptomics NanoStringDiff

updated 3.5 years ago by Laurent Gatto 1.6k • written 3.5 years ago by Pedro ▴ 10

vote

replies

1.1k

views

NanoStringDiff

4.3 years ago stephen.pollo • 0

votes

replies

861

views

NanoStringDiff GLM Gene expression

updated 4.7 years ago by James W. MacDonald 65k • written 4.7 years ago by Guillaume Robert • 0

votes

replies

1.4k

views

NanoStringDiff

updated 12 weeks ago by pjanas • 0 • written 4.9 years ago by noelleenright ▴ 10

vote

replies

1.9k

views

nanostringdiff nanostring NanoStringDiff

updated 5.9 years ago by James W. MacDonald 65k • written 5.9 years ago by casey.rimland ▴ 150

votes

replies

1.3k

views

nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

6.8 years ago c.kohler • 0

15 results • Page 1 of 1

Recent ...

Replies

Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Votes

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Awards • All