Bioconductor Nanostringdiff

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813

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NanoStringDiff clusterProfiler fgsea

11 months ago • updated 10 months ago pg45863 ▴ 10

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835

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DESeq2 NanoStringDiff limma

11 months ago pg45863 ▴ 10

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620

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GEOquery MicroarrayData Normalization Microarray NanoStringDiff

updated 14 months ago by James W. MacDonald 65k • written 14 months ago by Aleksandra • 0

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509

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NanoStringDiff

updated 16 months ago by James W. MacDonald 65k • written 16 months ago by Paraskevi • 0

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543

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DifferentialExpression NanoStringDiff

2.4 years ago sanrie10 • 0

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1.5k

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limma edgeR DESeq2 NanoStringDiff

updated 2.6 years ago by James W. MacDonald 65k • written 2.6 years ago by reberya • 0

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962

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Nan NanoStringDiff

2.8 years ago choijamts • 0

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649

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NanoStringDiff

3.1 years ago YM • 0

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891

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Bioconductor Transcriptomics NanoStringDiff

updated 3.5 years ago by Laurent Gatto 1.6k • written 3.5 years ago by Pedro ▴ 10

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NanoStringDiff

4.3 years ago stephen.pollo • 0

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865

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NanoStringDiff GLM Gene expression

updated 4.7 years ago by James W. MacDonald 65k • written 4.7 years ago by Guillaume Robert • 0

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NanoStringDiff NanoString nCounter DE analysis

updated 5 months ago by georgersmith • 0 • written 4.7 years ago by lim6432 ▴ 50

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NanoStringDiff

updated 3 months ago by pjanas • 0 • written 4.9 years ago by noelleenright ▴ 10

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nanostringdiff nanostring NanoStringDiff

updated 5.9 years ago by James W. MacDonald 65k • written 5.9 years ago by casey.rimland ▴ 150

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nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

6.8 years ago c.kohler • 0

15 results • Page 1 of 1

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Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Michael Love 41k

I don't really have any additional suggestion here.

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Dear Michael, I tried all three ways (the orIginal, increasing the number of required samples,and subsetting (the countdata and metadata be…

Comment: DESeq2 - dispersion estimation when there is none by Michael Love 41k

The red line does assume that shape but the fact the black points show that pattern is discussed in the 2014 paper. > Some caution is warr…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k

I don't really follow what you are saying. All you have to do is delete the NCBI.sqlite db and *re-run the script exactly as you did above.…

Comment: Methylation Analysis experiment design using Limma by hortense96 • 0

Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…

Votes

DESeq2: How to find out how well the model fits the data?

Comment: DESeq2 - dispersion estimation when there is none

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa

Answer: OrgDb for maize

Answer: DESeq2 - dispersion estimation when there is none

Awards • All

Scholar to Michael Love 41k