Bioconductor Nanostringdiff

Showing : nanostringdiff • reset

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814

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NanoStringDiff clusterProfiler fgsea

11 months ago pg45863 ▴ 10

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837

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DESeq2 NanoStringDiff limma

11 months ago pg45863 ▴ 10

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621

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GEOquery MicroarrayData Normalization Microarray NanoStringDiff

updated 14 months ago by James W. MacDonald 65k • written 14 months ago by Aleksandra • 0

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509

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NanoStringDiff

updated 16 months ago by James W. MacDonald 65k • written 16 months ago by Paraskevi • 0

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543

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DifferentialExpression NanoStringDiff

2.4 years ago sanrie10 • 0

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1.5k

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limma edgeR DESeq2 NanoStringDiff

updated 2.6 years ago by James W. MacDonald 65k • written 2.6 years ago by reberya • 0

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963

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Nan NanoStringDiff

2.8 years ago choijamts • 0

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1.9k

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NanoStringDiff NanoString nCounter DE analysis

updated 5 months ago by georgersmith • 0 • written 4.7 years ago by lim6432 ▴ 50

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649

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NanoStringDiff

3.1 years ago YM • 0

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892

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Bioconductor Transcriptomics NanoStringDiff

updated 3.5 years ago by Laurent Gatto 1.6k • written 3.5 years ago by Pedro ▴ 10

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1.1k

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NanoStringDiff

4.3 years ago stephen.pollo • 0

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865

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NanoStringDiff GLM Gene expression

updated 4.7 years ago by James W. MacDonald 65k • written 4.7 years ago by Guillaume Robert • 0

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1.4k

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NanoStringDiff

updated 3 months ago by pjanas • 0 • written 4.9 years ago by noelleenright ▴ 10

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1.9k

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nanostringdiff nanostring NanoStringDiff

updated 5.9 years ago by James W. MacDonald 65k • written 5.9 years ago by casey.rimland ▴ 150

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1.3k

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nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

6.8 years ago c.kohler • 0

15 results • Page 1 of 1

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Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

What I meant is even after deleting the NCBI.sqlite file, and re-running the script, an empty NCBI.sqlite file (0 kb) is created which is c…

Comment: DESeq2 output used for PCA plot on R studio by ATpoint ★ 4.0k

> Increase variability for mutants: use larger subtractive modifiers I was thinking the same as swbarnes. You're doing some data munging h…

Votes

Comment: get BM error

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

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Scholar to ATpoint ★ 4.0k