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ncRNA
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Job:
1 Computational Biologist and 1 Molecular Biologist
computational biology
molecular biology
RNA
r-loop
ncRNA
Job
5.4 years ago
l.brown
▴ 10
2
votes
1
reply
1.5k
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Transcript biotypes for ncRNA in GRCh37 using biomaRt?
grch37
transcripts
biotype
biomaRt
ncrna
updated 5.6 years ago by
James W. MacDonald
65k • written 5.6 years ago by
sergio.martinezcuesta
▴ 10
1
vote
0
replies
1.3k
views
Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gsea
ncrna
coexpression
gene set analysis
gene set testing
7.9 years ago
m.fletcher
▴ 20
0
votes
1
reply
1.1k
views
ncRNA search using biomaRt
biomart
ncrna
updated 8.5 years ago by
Thomas Maurel
▴ 800 • written 8.5 years ago by
Zhang,Jiexin
▴ 20
3
votes
10
replies
4.2k
views
Getting a list of all tRNA encoding genes for an organism?
trna
ncrna
genomicfeatures
featuredb
biomart
updated 9.0 years ago by
Hervé Pagès
16k • written 9.0 years ago by
Keith Hughitt
▴ 180
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Answer: Minfi - estimatecellscount
by
James W. MacDonald
65k
Don't filter first. You are likely removing the CpGs that are used to estimate the cell counts.
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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