Bioconductor Ncbi

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471

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Rstudio cDNA ensembldb NCBI

4 months ago R_Page • 0

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730

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RStudio convert ensembldb NCBI

5 months ago j_denton • 0

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626

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getGFF NCBI biomartr biomaRt

2.7 years ago Matan G. ▴ 60

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984

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MakeOrgPackageFromNCBI NCBI SQL AnnotationForge

updated 3.9 years ago by James W. MacDonald 65k • written 3.9 years ago by chefer • 0

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1.3k

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ontology edger limma ncbi organism package

updated 4.1 years ago by Gordon Smyth 50k • written 4.1 years ago by babak.loghmani ▴ 20

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2.2k

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rsubread ncbi GRCh38 hg38

updated 7.5 years ago by Wei Shi ★ 3.6k • written 7.5 years ago by jan.soderman • 0

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1.4k

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ncbi sra search

8.2 years ago massacomgrao • 0

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3.4k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 8.2 years ago by Hervé Pagès 16k • written 8.3 years ago by gokcen.eraslan ▴ 10

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3.2k

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microarray normalization ncbi

updated 8.9 years ago by James W. MacDonald 65k • written 8.9 years ago by pankajnarula84 ▴ 20

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1.2k

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annotate ncbi url

9.3 years ago reuma • 0

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

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Scholar to Peter Hickey ▴ 740