Bioconductor Nested design

Showing : nested design • reset

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1.5k

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deseq2 nested design

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by katarina.truve • 0

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1.5k

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nested design post hoc edgeR

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by ashley.lu • 0

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1.6k

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edgeR nested design differential expression

updated 7.0 years ago by Gordon Smyth 52k • written 7.0 years ago by chiayi • 0

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1.7k

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edgeR model.matrix nested design reference group

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by ri.lars ▴ 40

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1.2k

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deseq2 multiple factor design nested design

7.3 years ago michael.steffen ▴ 20

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5.4k

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deseq2 multiple factor design nested design interaction term

updated 8.0 years ago by Michael Love 43k • written 8.0 years ago by zahra.aboukhalil • 0

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2.1k

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deseq2 interaction model nested design

8.2 years ago • updated 8.1 years ago glocke01 ▴ 10

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1.7k

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edgeR removeBatchEffect nested design

updated 8.6 years ago by Aaron Lun ★ 28k • written 8.6 years ago by Jenny Drnevich ★ 2.0k

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2.0k

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multifactor nested design deseq2

8.6 years ago swaegers.janne • 0

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1.9k

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edger multifactor nested design

8.8 years ago • updated 8.6 years ago swaegers.janne • 0

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1.3k

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limma edger nested design

updated 8.6 years ago by Ryan C. Thompson ★ 7.9k • written 8.6 years ago by xluong • 0

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2.9k

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edger differential gene expression without replicate nested design help

updated 8.9 years ago by Aaron Lun ★ 28k • written 8.9 years ago by knipehf • 0

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1.4k

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edger nested design rnaseq

updated 9.9 years ago by Ryan C. Thompson ★ 7.9k • written 9.9 years ago by mrwarner09 • 0

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2.7k

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deseq2 Nested design random variable

updated 10.0 years ago by Michael Love 43k • written 10.0 years ago by Silva • 0

14 results • Page 1 of 1

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Answer: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

It is in ! It just took longer than planned :) ... aaaand now that I added the heatmap in I realize lits of genes really do not look like t…

Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

You neglected to add the code you use to generate the heatmap.

Answer: Error in readCodelinkSet function by James W. MacDonald 68k

Please don't cross-post to Biostars. Either post here or there, but not both.

Comment: What happened to the Joost2016 dataset by shepherl 4.1k

what package is this function from and what did it do when it was working?

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Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

Answer: limma correction for tumor purity

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Popular Question to gabriella.jacobson-eisenberg ▴ 20

Popular Question to nazaninhoseinkhan • 0