Bioconductor Nested design

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deseq2 nested design

updated 5.0 years ago by Michael Love 40k • written 5.0 years ago by katarina.truve • 0

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1.9k

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deseq2 nested design

updated 5.1 years ago by Michael Love 40k • written 5.1 years ago by xie186 • 0

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916

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nested design post hoc edgeR

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by ashley.lu • 0

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973

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edgeR nested design differential expression

updated 5.4 years ago by Gordon Smyth 48k • written 5.4 years ago by chiayi • 0

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1.0k

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edgeR model.matrix nested design reference group

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by ri.lars ▴ 40

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783

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deseq2 multiple factor design nested design

5.7 years ago michael.steffen ▴ 20

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deseq2 multiple factor design nested design interaction term

updated 6.4 years ago by Michael Love 40k • written 6.4 years ago by zahra.aboukhalil • 0

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1.6k

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deseq2 interaction model nested design

6.5 years ago glocke01 ▴ 10

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1.2k

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edgeR removeBatchEffect nested design

updated 7.0 years ago by Aaron Lun ★ 28k • written 7.0 years ago by Jenny Drnevich ★ 2.0k

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1.3k

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multifactor nested design deseq2

7.0 years ago swaegers.janne • 0

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1.3k

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edger multifactor nested design

7.2 years ago • updated 7.0 years ago swaegers.janne • 0

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888

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limma edger nested design

updated 7.0 years ago by Ryan C. Thompson 7.8k • written 7.0 years ago by xluong • 0

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2.2k

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edger differential gene expression without replicate nested design help

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by knipehf • 0

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edger nested design rnaseq

updated 8.3 years ago by Ryan C. Thompson 7.8k • written 8.3 years ago by mrwarner09 • 0

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2.2k

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deseq2 Nested design random variable

updated 8.3 years ago by Michael Love 40k • written 8.3 years ago by Silva • 0

15 results • Page 1 of 1

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Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k

I should also point out that you can find this out by yourself by going to [ensembl][1], clicking on the Biomart link, and then scrolling t…

Answer: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k

It's my understanding that the archived Biomart data are not complete, which is likely why you cannot get sequences. But you apparently jus…

Comment: ComBat_seq function in sva package does not return a matrix by Federico ▴ 10

Thanks for your help, problem solved :)

Answer: ComBat_seq function in sva package does not return a matrix by ATpoint ★ 3.4k

That happens if your `x` is a data.frame rather than a matrix. It is listed under the Q&A section in https://github.com/zhangyuqing/ComBat-…

Answer: error running exp2grn by Fabricio Almeida-Silva ▴ 40

Hi, Adriana. It seems like the gene IDs you specified in `Host13tfs$Protein.ID` do not match any gene IDs in the row names of your expr…

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ComBat_seq function in sva package does not return a matrix

Answer: ComBat_seq function in sva package does not return a matrix

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