Showing : network • reset
0
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0
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96
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using WGCNA, positive or negative corrlation between genes composing modules.
correlation wgcna network
9 weeks ago pharamac • 0
1
vote
9
replies
418
views
Interprteting the phylogenomic profiles plot
syntenet synteny Network
updated 23 days ago by • 0 • written 10 weeks ago by • 0
0
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0
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108
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WGCNA: minModuleSize is not responding correctly
wgcna Network WGCNA minModuleSize
10 weeks ago • updated 9 weeks ago bioinformaticssrm2011 • 0
0
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0
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201
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Gene co-expression network analysis with small sample size
Network
3 months ago Senthil • 0
0
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0
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125
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WCGNA: Using Eigengenes when correlating modules to external features? What about PC2, PC3???
Network Transcriptomics MicrobiomeData RNASEQ WCGNA
4 months ago Julieta • 0
2
votes
1
reply
194
views
WGCNA: weird issue of module with a single gene
network co-expression WGCNA
updated 4 months ago by ▴ 50 • written 4 months ago by ▴ 10
0
votes
1
reply
454
views
WGCNA: Obtaining a consensus network from sampledBlockwiseModules function output
Network consensus sampledBlockwiseModules resampling WGCNA
updated 12 months ago by ★ 2.7k • written 13 months ago by ▴ 30
0
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1
reply
423
views
Trouble with gene dendrogram
Network RNASeq WGCNA
updated 20 days ago by • 0 • written 14 months ago by • 0
0
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0
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309
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WGCNA error during network construction
WGCNA Network R
16 months ago gitanjali • 0
0
votes
1
reply
845
views
Network analysis: Is low confidence score valid (STRING DB)
STRINGdb Network
updated 20 months ago by 3.7k • written 20 months ago by • 0
0
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0
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471
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Job: Postdoc in computational cancer biology at IEO, Milan, Italy
TCGAbiolinks BiomedicalInformatics Network
22 months ago martin.schaefer • 0
0
votes
0
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597
views
Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
2.0 years ago jol.espinoz ▴ 40
4
votes
2
replies
663
views
iSEE - Custom Panel
Network GeneNetwork iSEE
updated 2.2 years ago by ★ 28k • written 2.2 years ago by • 0
0
votes
2
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984
views
Soft-threshold in WGCNA
wgcna network bicor threshold
updated 2.5 years ago by ★ 2.7k • written 2.5 years ago by ▴ 50
2
votes
2
replies
2.6k
views
Calculation of module membership in WGCNA
WGCNA RNA-seq ModuleMembership Network Hub gene
updated 8 months ago by ▴ 10 • written 2.5 years ago by ▴ 50
2
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0
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243
views
Quality Metrics for Graph Clustering for Biological Networks
R protein-interaction networks network
2.6 years ago hamza_karakurt ▴ 50
3
votes
2
replies
1.7k
views
[WGCNA]How to visualize network of genes in one module
WGCNA network
updated 3.0 years ago by 3.7k • written 3.0 years ago by ▴ 20
0
votes
4
replies
945
views
Case-control study using WGCNA
wgcna network rna-seq
3.1 years ago ag1805x ▴ 50
1
vote
1
reply
778
views
WGCNA gene clusters vs eigengenes
wgcna network coexpression eigengenes
updated 3.4 years ago by 47k • written 3.4 years ago by ▴ 10
2
votes
1
reply
872
views
Normalize within-/between-samples RNA-seq counts to weight networks
normalization CQN deseq2 RNA-seq network
updated 3.7 years ago by 39k • written 3.7 years ago by • 0
2
votes
3
replies
512
views
WGCNA from different lengths RNAseq read
wgcna network co-expression rnaseq
updated 3.8 years ago by ★ 2.7k • written 3.8 years ago by ▴ 50
7
votes
9
replies
2.0k
views
WGCNA - networking RNA seq gives only one module!
WGCNA R network co-expression
updated 15 days ago by ★ 2.7k • written 3.8 years ago by ▴ 10
0
votes
1
reply
874
views
igraph clustering for gene coexpression network
igraph network gene corexpression rna-seq
updated 17 months ago by 47k • written 3.8 years ago by • 0
0
votes
0
replies
509
views
Help with creating tumor cell line network
nci network
4.7 years ago torgeirous • 0
0
votes
0
replies
646
views
Help with generating network from gene expression data
gene expression network cytoscape
5.0 years ago torgeirous • 0
1
vote
1
reply
712
views
Setting soft threshold when comparing 2 networks in WGCNA?
wgcna coexpression cooccurrence coabundance network
updated 5.3 years ago by ▴ 700 • written 5.3 years ago by ▴ 40
15
votes
17
replies
17k
views
WGCNA: What is `soft thresholding`?
wgcna network analysis network correlation coexpression
updated 2.2 years ago by ▴ 700 • written 6.4 years ago by ▴ 40
1
vote
1
reply
1.1k
views
Custom scoring for subnetworks in BioNet
bionet network
updated 6.6 years ago by ▴ 120 • written 6.6 years ago by ▴ 650
1
vote
2
replies
951
views
Additional high-scoring subnetworks in BioNet
bionet network
updated 6.6 years ago by ▴ 120 • written 6.6 years ago by ▴ 650
0
votes
2
replies
2.1k
views
WGCNA - Using real data for tutorial III
pathways wgcna network rna-seq
7.1 years ago hywel.williams • 0
5
votes
14
replies
3.8k
views
Connection Refused on port 9000 - RCytoscape
rcytoscape r network graphBAM object
updated 7.1 years ago by ★ 8.2k • written 7.1 years ago by ▴ 50
0
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0
replies
926
views
Job: Post-doc: Bioinformatics/Metabolic networks (Genoscope, near Paris, France)
network metabolism post-doc Job
7.3 years ago kbastard • 0
2
votes
5
replies
961
views
runing NetBenchmark on my own datasets
software error network
updated 7.3 years ago by ▴ 20 • written 7.3 years ago by ▴ 40
0
votes
0
replies
920
views
PSICQUIC: Direction of interaction
network protein interaction analysis
7.6 years ago kmezhoud ▴ 10
1
vote
2
replies
2.1k
views
cnetplot() - library(clusterProfiler)
clusterProfiler network
7.6 years ago cristina della beffa ▴ 30
0
votes
0
replies
1.2k
views
Job: Help with finding R tutors for microarray analysis, next generation sequencing and constructing gene interaction networks needed
bioconductor microarray network tutoring differential gene expression Job
8.1 years ago Thomas.F.Hahn2 • 0
1
vote
7
replies
2.2k
views
Shiny app for RefNet, PSICQUIC: annotated protein/protein interactions
shiny network interactions
8.2 years ago pshannon ▴ 100
1
vote
2
replies
3.3k
views
Rearrange dendrogram to match merged modules in WGCNA?
wgcna dendrogram network hclust
updated 8.3 years ago by ▴ 180 • written 8.3 years ago by ▴ 240
2
votes
6
replies
3.8k
views
Error running TOMplot in WGCNA package
wgcna network
updated 8.4 years ago by ▴ 180 • written 8.4 years ago by ▴ 240
7
votes
1
reply
3.0k
views
Using RNA-Seq raw count data in Weighted Gene Co-Expression Network Analysis
rnaseq network limma
updated 8.4 years ago by 13k • written 8.4 years ago by ▴ 240
7
votes
4
replies
5.7k
views
WGCNA: overlapping colors in plotDendroAndColors?
wgcna plotDendroAndColors Network
updated 8.4 years ago by ★ 2.7k • written 8.4 years ago by ▴ 180
0
votes
0
replies
867
views
回复： XVector
Network Cancer IRanges XVector
8.4 years ago Hervé Pagès 16k
1
vote
1
reply
1.1k
views
WGCNA_ Eigengene and sample complications correlations
Network Network
updated 8.6 years ago by ★ 2.7k • written 8.6 years ago by ▴ 130
0
votes
1
reply
1.2k
views
WGCNA_ problem in creating scale free topology plot
Network Network
updated 8.6 years ago by 62k • written 8.6 years ago by ▴ 130
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0
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1.1k
views
PostDoc opportunity
Pathways Network Pathways Network
8.7 years ago Guest User ★ 12k
0
votes
0
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1.7k
views
Pathview question
Network convert pathview Network convert pathview
8.8 years ago Luo Weijun ★ 1.6k
0
votes
2
replies
4.7k
views
WGCNA package
Network Network
updated 8.8 years ago by ★ 2.7k • written 8.8 years ago by ▴ 130
0
votes
0
replies
1.6k
views
IdeogramTrack and bigWig file errors in Gviz
GO Network rtracklayer CAMERA Gviz GO Network rtracklayer CAMERA Gviz
8.8 years ago Robert Ivanek ▴ 730
0
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0
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694
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tudelft.CytoscapeRPC.CytoscapeRPCCallHandler: width is too small
Network Network
9.0 years ago Paul Shannon ▴ 750
0
votes
0
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842
views
RCytoscape: tudelft.CytoscapeRPC.CytoscapeRPCCallHandler: width is too small
SystemsBiology Network RCytoscape SystemsBiology Network RCytoscape
9.0 years ago Paul Shannon ▴ 750
50 results • Page 1 of 1
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Comment: Not able to download recount3 data by Niveditha ▴ 10
Not sure if this is a issue for which I need to create a ticket in the github link provided in the previous comment. Request you to confirm
Comment: Not able to download recount3 data by Niveditha ▴ 10
CURL command - curl https://www.sciserver.org/public-data/recount3/data/human/homes_index CURL command Works in the system with the follow…
Comment: Mutect version, matched normal and manual curation in PureCN by Ken C • 0
Hi Markus, Thanks for your previous help. I now have a particular question that I believe is related to manual curation of PureCN results,…
Comment: TPP2D - multicore computing for bootstrapNullAlternativeModel(...) by Tobias ▴ 40
I found a way that worked on my MacBook Pro and also on a Linux (Debian 10): ``` ##### multicore version ##### library(BiocParallel) null_…
Answer: TPP2D - multicore computing for bootstrapNullAlternativeModel(...) by James W. MacDonald 62k
You are already halfway to figuring this out for yourself. Here's how I would proceed. The argument 'BPPARAM' says something about 'opti…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
C: SGSeq: moving toward diffex from SGSeq analysis
A: SGSeq: moving toward diffex from SGSeq analysis
A: SGSeq: moving toward diffex from SGSeq analysis
SGSeq: moving toward diffex from SGSeq analysis
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