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network
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1.9k
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Interprteting the phylogenomic profiles plot
syntenet
synteny
Network
written 16 months ago by
Alexandros
• 0
0
votes
1
reply
1.7k
views
Is it proper to compare two WGCNA matrixes if they were raised to different power (soft threshold)?
Network
cluster
WGCNA
RNASeq
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
chiwut.wong
• 0
0
votes
1
reply
810
views
using WGCNA, positive or negative corrlation between genes composing modules.
correlation
wgcna
network
updated 3 months ago by
janetdelvalle056
• 0 • written 16 months ago by
pharamac
• 0
1
vote
1
reply
784
views
How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network
RCy3
updated 12 weeks ago by
alex.pico
▴ 20 • written 3 months ago by
David R
▴ 90
0
votes
3
replies
518
views
Clustering coefficient of synteny network
Network
syntenet
Clustering
coefficient
8 months ago
Alexandros
• 0
0
votes
0
replies
484
views
News:
Course - Network Analysis in Systems Biology with R/Bioconductor
Bioconductor
Network
RNASeqData
SystemsBiology
8 months ago
info
▴ 10
0
votes
2
replies
283
views
StringDB: Cannot use payload mechanism to colour nodes
RNASeqData
STRINGdb
DifferentialExpression
GraphAndNetwork
Network
3 months ago
Luca
• 0
0
votes
1
reply
214
views
WGCNA Soft Power
Normalization
DESeq2
Network
RNASeqData
updated 9 weeks ago by
ATpoint
★ 4.0k • written 9 weeks ago by
Ömür Koray
• 0
8 results • Page
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Replies
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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