Showing : network • reset
1
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10
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1.5k
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Interprteting the phylogenomic profiles plot
syntenet synteny Network
written 10 months ago by • 0
7
votes
9
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2.8k
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WGCNA - networking RNA seq gives only one module!
WGCNA R network co-expression
updated 8 months ago by ★ 2.8k • written 4.4 years ago by ▴ 10
0
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3
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299
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Clustering coefficient of synteny network
Network syntenet Clustering coefficient
12 weeks ago • updated 11 weeks ago Alexandros • 0
0
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1
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702
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Trouble with gene dendrogram
Network RNASeq WGCNA
updated 8 months ago by • 0 • written 22 months ago by • 0
0
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1
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347
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Is it proper to compare two WGCNA matrixes if they were raised to different power (soft threshold)?
Network cluster WGCNA RNASeq
updated 9 weeks ago by 63k • written 9 weeks ago by • 0
0
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452
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Gene co-expression network analysis with small sample size
Network
11 months ago Senthil • 0
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0
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401
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WGCNA: minModuleSize is not responding correctly
wgcna Network WGCNA minModuleSize
10 months ago bioinformaticssrm2011 • 0
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0
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369
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using WGCNA, positive or negative corrlation between genes composing modules.
correlation wgcna network
10 months ago pharamac • 0
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0
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171
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News: Course - Network Analysis in Systems Biology with R/Bioconductor
Bioconductor Network RNASeqData SystemsBiology
11 weeks ago info ▴ 10
9 results • Page 1 of 1
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Answer: Problems with FLOWAI by SHASHI • 0
Additionally, if you're looking to clean FCS data files, you can utilize an R script. I've prepared a comprehensive YouTube tutorial to aid…
Answer: Is SeqSQC compatible with hg38? by James W. MacDonald 63k
I'll answer your question with a question. Is there any reason to believe that things like IBD or PCA or Sex checks would be dependent on t…
Comment: using featureCounts (Subread) to count only spliced reads per gene - behavior of by Gregory • 0
Thanks for the prompt response, Gordon. I'm looking for count at the gene level - the gene id is the meta feature, so one row per gene in …
Comment: DiffBind handling of replicates and consensus by Rory Stark ★ 5.0k
You may want to try different values for the `normalize` parameter: dbObj <- dba.normalize(DBA = dbObj, library = "RiP", normalize=DBA…
Comment: DiffBind: dba.plotProfile(profiles) by Rory Stark ★ 5.0k
Yes, setting `raster_quality` down is a good way to address this issue. I've taken to using `raster_quality=1` in general as I think the pl…
Votes
Answer: How do I merge a list of GRanges?
Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar
Comment: DiffBind: dba.plotProfile(profiles)
Answer: DiffBind - how to prep the sample matrix when multiple bam files are used by MAC
Comment: DiffBind: dba.plotProfile(profiles)
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