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Join the Technical Advisory Board
Bioconductor
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11 months ago
Maria Doyle
▴ 70
1
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News:
Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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12 months ago
Maria Doyle
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News:
European Bioconductor Conference 2023 planning
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updated 2 days ago by
lauryfriese932
• 0 • written 18 months ago by
Maria Doyle
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News:
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19 months ago • updated 17 months ago
Peter Hickey
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New Bioconductor Community Advisory Board Members for 2021
bioconductoroversight
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BiocVersion
3.1 years ago
Matthew Ritchie
▴ 1000
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992
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Early career researchers: nominate to present your work at BVCN virtual conference on microbiome research
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3.2 years ago
Matthew Ritchie
▴ 1000
4
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2.2k
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Join the Bioconductor Community Advisory Board
bioconductoroversight
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BiocVersion
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updated 3.2 years ago by
aedin
• 0 • written 3.2 years ago by
Matthew Ritchie
▴ 1000
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726
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SUPPORT SITE UPGRADE TODAY -- PLEASE REFRAIN FROM POSTING
support site
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3.5 years ago
shepherl
3.8k
2
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3
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997
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DESeq2 multiple groups comparison issues, incorrect log2FC results in a small proportion of genes
deseq2
updated 3.5 years ago by
Michael Love
41k • written 3.5 years ago by
helenhuang.math
• 0
0
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0
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729
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News:
BridgeDbR devel package upgraded to BridgeDb 3
bridgedbr
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3.5 years ago
egon.willighagen
▴ 10
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937
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Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
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3.5 years ago
kayla.interdonato
▴ 160
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976
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News:
Project-wide Code of Conduct statement for Bioconductor
Coc
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Bioconductor
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3.5 years ago
Laurent Gatto
1.6k
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1.4k
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News:
Final List of Deprecated Packages for Bioc3.12
annotation
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experimentdata
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3.5 years ago
shepherl
3.8k
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980
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3.6 years ago
shepherl
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Bioconductor Release 3.12 Schedule Posted
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3.6 years ago
shepherl
3.8k
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BioCAsia Virtual Meeting, 15-18 October 2020
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written 3.6 years ago by
Matthew Ritchie
▴ 1000
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News:
List of Deprecated Packages for Bioc3.12
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News
3.6 years ago
shepherl
3.8k
4
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News:
ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
EnsDb
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AnnotationHub
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3.7 years ago
Johannes Rainer
★ 2.0k
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Ensembl 101 hase been released
Ensembl
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3.7 years ago
mchakiachvili
▴ 20
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768
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James Taylor foundation: scholarships to Biological Data Science 2020 at CSHL
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3.8 years ago
Kasper Daniel Hansen
★ 6.5k
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3
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New Package Submission Workflow Updates!
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bioconductor
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updated 2.8 years ago by
jonathan.dekermanjian
• 0 • written 3.8 years ago by
shepherl
3.8k
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3.8 years ago
shepherl
3.8k
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800
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Award Nomination Deadline Monday June 15th!
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3.9 years ago
shepherl
3.8k
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747
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Scientific or Informatic Technology Advancement Award!
bioconductor
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3.9 years ago
shepherl
3.8k
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790
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Long-term contribution award
bioc2020
bioconductor
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3.9 years ago
shepherl
3.8k
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1000
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Community engagement and outreach award
bioconductor
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written 3.9 years ago by
shepherl
3.8k
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bioconductor
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3.9 years ago
shepherl
3.8k
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0
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810
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News:
List of Deprecated Packages for Bioc3.12
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3.9 years ago
shepherl
3.8k
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0
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795
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News:
New Package Bioconductor Award
bioconductor
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3.9 years ago
shepherl
3.8k
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734
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News:
Support Site Bioconductor Award
bioconductor
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3.9 years ago
shepherl
3.8k
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742
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Bioc2020 - Virtual Conference Registration
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3.9 years ago
shepherl
3.8k
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703
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Updated annotation packages
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3.9 years ago
kayla.interdonato
▴ 160
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655
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Single Package Builder / New Package Submission
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3.9 years ago
shepherl
3.8k
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856
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News:
Bioconductor Technical Advisory Board Nominees, 2020
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written 3.9 years ago by
Martin Morgan
25k
4
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711
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Public Calendar of Events
Bioconductor
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3.9 years ago
shepherl
3.8k
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1.2k
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News:
ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
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ensembldb
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4.0 years ago
Johannes Rainer
★ 2.0k
1
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1
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910
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News:
Issues with annotation packages
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4.0 years ago
kayla.interdonato
▴ 160
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0
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861
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News:
Bioconductor 3.11 OrgDb and TxDb packages now available
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4.0 years ago
kayla.interdonato
▴ 160
1
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780
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News:
Ensembl 100 has been released
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e100
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4.0 years ago
Thomas Maurel
▴ 800
4
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803
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News:
Bioconductor 3.11 is Released!
software
bioconductor
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4.0 years ago
shepherl
3.8k
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869
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News:
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bioconductor
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4.0 years ago
shepherl
3.8k
4
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3.8k
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News:
Nominations for Bioconductor Awards!
Bioc2020
Bioconductor
Awards
Recognition
News
4.0 years ago • updated 3.9 years ago
shepherl
3.8k
10
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0
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2.7k
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News:
Professor James Taylor
in memoriam
News
4.1 years ago
Martin Morgan
25k
0
votes
0
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840
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News:
Last Day to Submit New Packages for Bioconductor Release 3.11
deadline
new submission
bioconductor
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News
4.1 years ago
shepherl
3.8k
2
votes
0
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817
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News:
Bioconductor Community Advisory Board Members
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bioconductor oversight
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News
4.1 years ago
Matthew Ritchie
▴ 1000
1
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2
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2.5k
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News:
Bioc2020 - Call for BOF/HAK/FAQ Sections
conference
bioc2020
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deadline
News
4.1 years ago • updated 3.8 years ago
shepherl
3.8k
0
votes
3
replies
1.0k
views
News:
Final List of Deprecated Packages for Bioc3.11
software
annotation
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deprecated
News
updated 4.0 years ago by
kayla.interdonato
▴ 160 • written 4.1 years ago by
shepherl
3.8k
0
votes
0
replies
731
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News:
Deadline for devel branch 3.11 to pass R CMD build and R CMD check
release
devel
bioconductor
News
4.1 years ago
shepherl
3.8k
0
votes
0
replies
692
views
News:
Bioconductor Release 3.10 Code Freeze Deadline
release
deadline
bioconductor
News
4.1 years ago
shepherl
3.8k
0
votes
0
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660
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News:
Bioconductor 3.11 db0s are available
annotation
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4.1 years ago
kayla.interdonato
▴ 160
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
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Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
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