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Join the Technical Advisory Board
Bioconductor
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11 months ago
Maria Doyle
▴ 70
1
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Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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12 months ago
Maria Doyle
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News:
European Bioconductor Conference 2023 planning
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updated 3 days ago by
lauryfriese932
• 0 • written 18 months ago by
Maria Doyle
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19 months ago • updated 17 months ago
Peter Hickey
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New Bioconductor Community Advisory Board Members for 2021
bioconductoroversight
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BiocVersion
3.1 years ago
Matthew Ritchie
▴ 1000
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993
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Early career researchers: nominate to present your work at BVCN virtual conference on microbiome research
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3.2 years ago
Matthew Ritchie
▴ 1000
4
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bioconductoroversight
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BiocVersion
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updated 3.2 years ago by
aedin
• 0 • written 3.2 years ago by
Matthew Ritchie
▴ 1000
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726
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SUPPORT SITE UPGRADE TODAY -- PLEASE REFRAIN FROM POSTING
support site
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3.5 years ago
shepherl
3.8k
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3
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998
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DESeq2 multiple groups comparison issues, incorrect log2FC results in a small proportion of genes
deseq2
updated 3.5 years ago by
Michael Love
41k • written 3.5 years ago by
helenhuang.math
• 0
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730
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News:
BridgeDbR devel package upgraded to BridgeDb 3
bridgedbr
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3.5 years ago
egon.willighagen
▴ 10
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937
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Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
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3.5 years ago
kayla.interdonato
▴ 160
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News:
Project-wide Code of Conduct statement for Bioconductor
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Bioconductor
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3.5 years ago
Laurent Gatto
1.6k
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News:
Final List of Deprecated Packages for Bioc3.12
annotation
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News
3.6 years ago • updated 3.5 years ago
shepherl
3.8k
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New Package Submission Deadline for Bioc Release 3.12
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3.6 years ago
shepherl
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3.6 years ago
shepherl
3.8k
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BioCAsia Virtual Meeting, 15-18 October 2020
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written 3.6 years ago by
Matthew Ritchie
▴ 1000
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News:
List of Deprecated Packages for Bioc3.12
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3.6 years ago
shepherl
3.8k
4
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News:
ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
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3.7 years ago
Johannes Rainer
★ 2.0k
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Ensembl 101 hase been released
Ensembl
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3.7 years ago
mchakiachvili
▴ 20
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James Taylor foundation: scholarships to Biological Data Science 2020 at CSHL
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3.8 years ago
Kasper Daniel Hansen
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3
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New Package Submission Workflow Updates!
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bioconductor
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updated 2.8 years ago by
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• 0 • written 3.8 years ago by
shepherl
3.8k
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Bioc2020 - Call for BOF/HAK/FAQ Sections Still Open
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3.8 years ago
shepherl
3.8k
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800
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Award Nomination Deadline Monday June 15th!
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3.9 years ago
shepherl
3.8k
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748
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Scientific or Informatic Technology Advancement Award!
bioconductor
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3.9 years ago
shepherl
3.8k
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792
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Long-term contribution award
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bioconductor
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3.9 years ago
shepherl
3.8k
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1000
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Community engagement and outreach award
bioconductor
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written 3.9 years ago by
shepherl
3.8k
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744
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Documentation Bioconductor Award
bioconductor
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3.9 years ago
shepherl
3.8k
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0
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812
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News:
List of Deprecated Packages for Bioc3.12
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3.9 years ago
shepherl
3.8k
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0
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796
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News:
New Package Bioconductor Award
bioconductor
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3.9 years ago
shepherl
3.8k
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735
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News:
Support Site Bioconductor Award
bioconductor
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3.9 years ago
shepherl
3.8k
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743
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Bioc2020 - Virtual Conference Registration
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3.9 years ago
shepherl
3.8k
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703
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News:
Updated annotation packages
annotation
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3.9 years ago
kayla.interdonato
▴ 160
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0
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655
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Single Package Builder / New Package Submission
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3.9 years ago
shepherl
3.8k
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857
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News:
Bioconductor Technical Advisory Board Nominees, 2020
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written 3.9 years ago by
Martin Morgan
25k
4
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712
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Public Calendar of Events
Bioconductor
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3.9 years ago
shepherl
3.8k
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1.2k
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News:
ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
ensembl
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ensembldb
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4.0 years ago
Johannes Rainer
★ 2.0k
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1
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911
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News:
Issues with annotation packages
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4.0 years ago
kayla.interdonato
▴ 160
0
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0
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861
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News:
Bioconductor 3.11 OrgDb and TxDb packages now available
annotation
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4.0 years ago
kayla.interdonato
▴ 160
1
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0
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781
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News:
Ensembl 100 has been released
biomart
ensembl
e100
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4.0 years ago
Thomas Maurel
▴ 800
4
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0
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804
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News:
Bioconductor 3.11 is Released!
software
bioconductor
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4.0 years ago
shepherl
3.8k
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0
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870
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News:
Import Deadlines for RELEASE 3.11
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devel
deadline
bioconductor
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4.0 years ago
shepherl
3.8k
4
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1
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3.8k
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News:
Nominations for Bioconductor Awards!
Bioc2020
Bioconductor
Awards
Recognition
News
4.0 years ago • updated 3.9 years ago
shepherl
3.8k
10
votes
0
replies
2.7k
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News:
Professor James Taylor
in memoriam
News
4.1 years ago
Martin Morgan
25k
0
votes
0
replies
842
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News:
Last Day to Submit New Packages for Bioconductor Release 3.11
deadline
new submission
bioconductor
release
News
4.1 years ago
shepherl
3.8k
2
votes
0
replies
817
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News:
Bioconductor Community Advisory Board Members
news
bioconductor oversight
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News
4.1 years ago
Matthew Ritchie
▴ 1000
1
vote
2
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2.5k
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News:
Bioc2020 - Call for BOF/HAK/FAQ Sections
conference
bioc2020
talks
deadline
News
4.1 years ago • updated 3.8 years ago
shepherl
3.8k
0
votes
3
replies
1.0k
views
News:
Final List of Deprecated Packages for Bioc3.11
software
annotation
experiment data
deprecated
News
updated 4.0 years ago by
kayla.interdonato
▴ 160 • written 4.1 years ago by
shepherl
3.8k
0
votes
0
replies
731
views
News:
Deadline for devel branch 3.11 to pass R CMD build and R CMD check
release
devel
bioconductor
News
4.1 years ago
shepherl
3.8k
0
votes
0
replies
693
views
News:
Bioconductor Release 3.10 Code Freeze Deadline
release
deadline
bioconductor
News
4.1 years ago
shepherl
3.8k
0
votes
0
replies
661
views
News:
Bioconductor 3.11 db0s are available
annotation
db0
news
release
News
4.1 years ago
kayla.interdonato
▴ 160
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
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Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
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