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newwave
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Statistical test
NewWave
written 4 months ago by
mario
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0
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1
reply
363
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Error in (function (classes, fdef, mtable) : Function 'raster' tag 'logical' cannot find an inheritance method
NewWave
updated 4 months ago by
shepherl
3.8k • written 4 months ago by
1135296741
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error running exp2grn
NewWave
updated 6 months ago by
Fabricio Almeida-Silva
▴ 40 • written 8 months ago by
adriana
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featureCounts error Assertion failed: (NULL == pairer -> bam_margin_table -> appendix2), function SAM_pairer_finish_margin_table, file input-files.c,…
NewWave
7 months ago
Kilian
• 0
0
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2
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317
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Adding chromosome numbers to the respective gene ids of DESeq2 output file
NewWave
hgu133a2.db
updated 7 months ago by
ATpoint
★ 4.0k • written 7 months ago by
roy23032
• 0
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Spam:
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mgu74bv2cdf
NewWave
hgu133a2.db
9 months ago
roma
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Spam:
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mgu74bv2cdf
NewWave
hgu133a2.db
9 months ago
roma
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625
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Extracting DEG from topTags
NewWave
updated 10 months ago by
Gordon Smyth
50k • written 10 months ago by
liujy4
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0
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377
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How to use txtimport and do differential expression
NewWave
updated 10 months ago by
James W. MacDonald
65k • written 10 months ago by
SuASNAVASCH
• 0
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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