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newwave
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Statistical test
NewWave
written 4 months ago by
mario
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Error in (function (classes, fdef, mtable) : Function 'raster' tag 'logical' cannot find an inheritance method
NewWave
updated 4 months ago by
shepherl
3.8k • written 4 months ago by
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error running exp2grn
NewWave
updated 6 months ago by
Fabricio Almeida-Silva
▴ 40 • written 8 months ago by
adriana
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featureCounts error Assertion failed: (NULL == pairer -> bam_margin_table -> appendix2), function SAM_pairer_finish_margin_table, file input-files.c,…
NewWave
7 months ago
Kilian
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317
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Adding chromosome numbers to the respective gene ids of DESeq2 output file
NewWave
hgu133a2.db
updated 7 months ago by
ATpoint
★ 4.0k • written 7 months ago by
roy23032
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Spam:
7z password remover tool
mgu74bv2cdf
NewWave
hgu133a2.db
9 months ago
roma
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Spam:
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mgu74bv2cdf
NewWave
hgu133a2.db
9 months ago
roma
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622
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Extracting DEG from topTags
NewWave
updated 10 months ago by
Gordon Smyth
50k • written 10 months ago by
liujy4
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How to use txtimport and do differential expression
NewWave
updated 10 months ago by
James W. MacDonald
65k • written 10 months ago by
SuASNAVASCH
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
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Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
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