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newwave
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Statistical test
NewWave
written 3 months ago by
mario
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Error in (function (classes, fdef, mtable) : Function 'raster' tag 'logical' cannot find an inheritance method
NewWave
updated 4 months ago by
shepherl
3.8k • written 4 months ago by
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error running exp2grn
NewWave
updated 6 months ago by
Fabricio Almeida-Silva
▴ 40 • written 7 months ago by
adriana
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featureCounts error Assertion failed: (NULL == pairer -> bam_margin_table -> appendix2), function SAM_pairer_finish_margin_table, file input-files.c,…
NewWave
6 months ago
Kilian
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Adding chromosome numbers to the respective gene ids of DESeq2 output file
NewWave
hgu133a2.db
updated 6 months ago by
ATpoint
★ 4.0k • written 6 months ago by
roy23032
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Spam:
7z password remover tool
mgu74bv2cdf
NewWave
hgu133a2.db
9 months ago
roma
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Spam:
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mgu74bv2cdf
NewWave
hgu133a2.db
9 months ago
roma
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Extracting DEG from topTags
NewWave
updated 10 months ago by
Gordon Smyth
50k • written 10 months ago by
liujy4
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How to use txtimport and do differential expression
NewWave
updated 10 months ago by
James W. MacDonald
65k • written 10 months ago by
SuASNAVASCH
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Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures
by
Gordon Smyth
50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Comment: Single-Cell Data Simulation from Bulk RNA-seq
by
wichaidi
• 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
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Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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