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nnnorm
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How does one deal with spatial effects detected on single channel microarrays?
Microarray
Normalization
hu6800
affy
gcrma
marray
nnNorm
Harshlight
Microarray
hu6800
10.5 years ago
Scott Robinson
▴ 130
0
votes
6
replies
1.6k
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How does one deal with spatial effects detected on single channel microarrays?
Microarray
Normalization
affy
marray
nnNorm
Microarray
Normalization
affy
marray
nnNorm
updated 10.6 years ago by
cstrato
★ 3.9k • written 10.6 years ago by
Guest User
★ 13k
0
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1
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961
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nnNorm loading problem
nnNorm
nnNorm
updated 17.7 years ago by
Seth Falcon
★ 7.4k • written 17.7 years ago by
D.Enrique ESCOBAR ESPINOZA
▴ 360
0
votes
0
replies
670
views
need a neural network package for microarray data
Normalization
nnNorm
Normalization
nnNorm
18.4 years ago
Tarca, Adi
▴ 570
0
votes
0
replies
821
views
Bug in maNormNN
Microarray
Normalization
GO
Visualization
Network
nnNorm
Microarray
Normalization
GO
18.5 years ago
Tarca, Adi
▴ 570
5 results • Page
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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