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nnnorm
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How does one deal with spatial effects detected on single channel microarrays?
Microarray
Normalization
hu6800
affy
gcrma
marray
nnNorm
Harshlight
Microarray
hu6800
10.5 years ago
Scott Robinson
▴ 130
0
votes
6
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1.6k
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How does one deal with spatial effects detected on single channel microarrays?
Microarray
Normalization
affy
marray
nnNorm
Microarray
Normalization
affy
marray
nnNorm
updated 10.6 years ago by
cstrato
★ 3.9k • written 10.6 years ago by
Guest User
★ 13k
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959
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nnNorm loading problem
nnNorm
nnNorm
updated 17.6 years ago by
Seth Falcon
★ 7.4k • written 17.6 years ago by
D.Enrique ESCOBAR ESPINOZA
▴ 360
0
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0
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667
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need a neural network package for microarray data
Normalization
nnNorm
Normalization
nnNorm
18.4 years ago
Tarca, Adi
▴ 570
0
votes
0
replies
820
views
Bug in maNormNN
Microarray
Normalization
GO
Visualization
Network
nnNorm
Microarray
Normalization
GO
18.4 years ago
Tarca, Adi
▴ 570
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Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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