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Comment: How to combine two DESeq2 objects (dds) for analysis
by
TzuChiao
•
0
Hello Luke,
Since DESeq2 takes raw counts, and provided that you only have the DESeq objects, you can extract raw counts with
```r
count_…
Comment: deseq2 normalized counts as an input to deseq2
by
yomani.sarathkumara
•
0
Hi Michael,
I have a similar question regarding the normalization of my RNAseq data.
I used VSN normalization on pre-filtered data as f…
Comment: Annotated dendogram (tree) from tbl_graph
by
christian.dina
•
0
Thx,
actually I have started reading it and think at some point I'll get it. However,
I was looking for something that would not need me …
Comment: pathview: Warning: Failed to download KEGG xml/png files, hsa04110 skipped!
by
덕윤
•
0
Really appreciate your help :)
At last, I can fix my problem. I have learned to check my code.
Comment: how can I do gene differential analysis on data after vst
by
Gordon Smyth
47k
I advised you to use limma-trend, which you can look up in the limma User's Guide. You simply analyse the vst values as if they were from a…
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