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noiseq
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406
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Inquiring about Comparative Analysis without Replicates in NOIseq R Package
NOISeq
withoutreplicate
Noiseq
updated 7 months ago by
ATpoint
★ 4.0k • written 7 months ago by
Rutuja
• 0
1
vote
1
reply
721
views
NOIseq Probability column
RNAseq
RNASeqData
NOISeq
22 months ago • updated 21 months ago
Pratibha
▴ 10
0
votes
2
replies
890
views
Differential expression on RNAseq without replicates
DESeq2
NOISeq
edgeR
updated 3.3 years ago by
ATpoint
★ 4.0k • written 3.3 years ago by
Themis
• 0
3
votes
6
replies
1.6k
views
deseq2 + filtering low counts with noiseq function
deseq2
noiseq
lowcounts
rnaseq
updated 2.2 years ago by
Michael Love
41k • written 3.5 years ago by
andreia
▴ 10
0
votes
0
replies
657
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
4.6 years ago
ag1805x
▴ 80
0
votes
0
replies
620
views
NOISeq 'readData' not writing correctly
software error
NOISeq
4.7 years ago
jledmondson
• 0
0
votes
1
reply
776
views
Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
4.8 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
917
views
Noiseqbio function (NOISEQ package)
noiseq
logfoldchange
5.9 years ago
Aurora
▴ 20
0
votes
0
replies
964
views
NOISeq: Need help with my data frame
R
noiseq
data.frame
6.2 years ago
aokoro
• 0
0
votes
0
replies
1.5k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
6.5 years ago
Luiz
• 0
0
votes
3
replies
1.4k
views
Is the CPM filtering method from NOISeq unsupervised?
rnaseq
de analysis
gene filtering
noiseq
updated 6.6 years ago by
James W. MacDonald
65k • written 6.6 years ago by
Mau
▴ 50
0
votes
5
replies
3.6k
views
GC content and length bias correction with DESeq2 using cqn normalization factor matrix
deseq2
cqn
noiseq
updated 6.9 years ago by
Michael Love
41k • written 6.9 years ago by
glmazzo
▴ 10
0
votes
0
replies
1.2k
views
NOISeq error message while using ARSyNseq batch correction function
noiseq
batch effect
ARSyNseq
8.4 years ago
lina.faller
• 0
0
votes
0
replies
991
views
Question: type of NOISeq package input file
RNASeq
NOISeq
RNASeq
NOISeq
11.1 years ago
Guest User
★ 13k
0
votes
2
replies
2.7k
views
NOISeq initialization problem
NOISeq
NOISeq
updated 11.5 years ago by
Dan Tenenbaum
★ 8.2k • written 11.5 years ago by
Guest User
★ 13k
0
votes
4
replies
1.9k
views
NOISeq installation error
NOISeq
NOISeq
updated 11.5 years ago by
Sean Davis
21k • written 11.5 years ago by
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.1k
views
NOISeq-real input parameters
NOISeq
NOISeq
12.0 years ago
Guest User
★ 13k
17 results • Page
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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