Bioconductor Nondetects

Showing : nondetects • reset

votes

replies

237

views

qPCR nondetects

5 months ago Ed Siefker ▴ 230

vote

replies

562

views

bug nondetects HTqPCR

updated 5 months ago by Nat.Nataren • 0 • written 7 months ago by Ed Siefker ▴ 230

votes

replies

490

views

nondetects qPCR qPCRData

2.9 years ago jhackett ▴ 30

votes

840

views

nondetects qpcrImpute

updated 4.9 years ago by Matthew McCall ▴ 830 • written 5.1 years ago by D.J.Coulson2 • 0

vote

replies

1.7k

views

nondetects software error

updated 6.1 years ago by corocla • 0 • written 6.2 years ago by Ryan C. Thompson ★ 7.9k

votes

replies

2.0k

views

qPCRset object nondetects r package txt

updated 6 months ago by Nat.Nataren • 0 • written 6.3 years ago by s.m.may • 0

votes

1.3k

views

nondetects R PCR

updated 6.7 years ago by Matthew McCall ▴ 830 • written 6.7 years ago by garciaii_antuerpia • 0

7 results • Page 1 of 1

Recent ...

Replies

Comment: Differential peaks that were not identified in diffbind were identified in diseq by ATpoint ★ 4.0k

Make an MAplot. There is almost certainly an issue with normalization here given the very biased distribution of logFCs as in this Volcano.

Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100

See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…

Comment: A ComBat-seq issue: the covariates are confounded by W. Evan Johnson ▴ 850

This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…

Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k

Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…

Answer: Adding columns to DEXSeqResults object by Alejandro Reyes ★ 1.9k

I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…

Votes

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

Awards • All