Bioconductor Nondetects

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2.0k

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qPCRset object nondetects r package txt

updated 6 months ago by Nat.Nataren • 0 • written 6.3 years ago by s.m.may • 0

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1.7k

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nondetects software error

updated 6.2 years ago by corocla • 0 • written 6.3 years ago by Ryan C. Thompson ★ 7.9k

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1.3k

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nondetects R PCR

updated 6.7 years ago by Matthew McCall ▴ 830 • written 6.7 years ago by garciaii_antuerpia • 0

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843

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nondetects qpcrImpute

updated 4.9 years ago by Matthew McCall ▴ 830 • written 5.2 years ago by D.J.Coulson2 • 0

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574

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bug nondetects HTqPCR

updated 6 months ago by Nat.Nataren • 0 • written 7 months ago by Ed Siefker ▴ 230

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491

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nondetects qPCR qPCRData

2.9 years ago jhackett ▴ 30

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241

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qPCR nondetects

5 months ago Ed Siefker ▴ 230

7 results • Page 1 of 1

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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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