Biostar Normalization

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Normalization edgeR

updated 6 hours ago by Gordon Smyth 45k • written 20 hours ago by kevin • 0

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ATACSeq Normalization DiffBind

updated 6 days ago by Rory Stark ★ 4.4k • written 27 days ago by bers.anthrope • 0

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165

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counts Normalization DESeq2

updated 8 days ago by swbarnes2 ★ 1.0k • written 9 days ago by Hicham • 0

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Normalization edgeR

updated 19 days ago by Gordon Smyth 45k • written 20 days ago by Barista • 0

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2.7k

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EdgeR normalization fastq txt TMM

updated 8 days ago by Gordon Smyth 45k • written 6.5 years ago by hamidrezarazzaghian • 0

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788

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edger deseq2 normalization removing genes

updated 22 days ago by Gordon Smyth 45k • written 2.5 years ago by aec ▴ 90

6 results • Page 1 of 1

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Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by Yang Shi • 0

Thanks for your excellent reply sir! But there are still some points confused me. (1).dbGetQuery get 93 kinds of probes. Would be okay for …

Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook by Kevin Blighe 3.5k

Great! problem solved, then?

Comment: Quantile Normalization after rma or not? by Yang Shi • 0

Got that sir! Really thank you!

Answer: Is it necessary to standardize Combat in R? by James W. MacDonald 59k

If you already have normalized data, then there is no reason to do something else like centering or scaling the data.

Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by James W. MacDonald 59k

There are some QC probes that you might use. ``` > library(pd.hg.u219) > library(DBI) > con <- db(pd.hg.u219) > dbListTables(con) […

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