Bioconductor Normalized counts

Showing : normalized counts • reset

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1.3k

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scran scater normalized counts

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by Radek ▴ 90

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1.3k

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deseq2 normalized counts

updated 6.0 years ago by Steve Lianoglou ★ 13k • written 6.0 years ago by anaQ • 0

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1.6k

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normalized counts log2

6.2 years ago agdif ▴ 10

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8.2k

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rnaseq deseq2 normalized counts

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by JoannaF ▴ 10

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5.2k

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deseq2 normalization normalized counts

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by naets_matthias • 0

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1.8k

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edger batch effect normalized counts

updated 6.9 years ago by Ryan C. Thompson ★ 7.9k • written 6.9 years ago by Yahan • 0

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deseq2 cqn normalization normalized counts

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by mark.ebbert • 0

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1.2k

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normalized counts grch37 grch38 r bioconductor

7.2 years ago • updated 7.1 years ago salvocomplicazioni1 • 0

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1.8k

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cn.mops log normalized counts table

updated 7.4 years ago by Günter Klambauer ▴ 540 • written 7.4 years ago by falk.zakrzewski • 0

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1.6k

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deseq2 counts normalized counts

updated 8.3 years ago by Steve Lianoglou ★ 13k • written 8.4 years ago by snamjoshi87 ▴ 40

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2.1k

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shrna edger deseq2 differential expression normalized counts

8.4 years ago Jane Merlevede ▴ 90

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3.0k

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diffbind normalized counts

8.4 years ago GFM ▴ 20

12 results • Page 1 of 1

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Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

Yes, I did. Here is my code. data.path <- "~/GeoMx_best_practice/data/" filepath <- paste(data.path, "Joon_QC_NPC_4_…

Comment: fail to use addPerROIQC in Rmd by shepherl 4.1k

Just covering all bases. You defined spe earlier in the R markdown that is not shown?

Comment: Open Sesame: in what genes are my differentially methylated probes!! by alyssa-daniel • 0

@zhouwanding I have a question regarding DML analysis. I understand the Est_ output is describing the difference in methylation between the…

Comment: DESeq2 dispersion estimates fitting drastically different based on explanatory v by Sam • 0

Here is the explanatory variables![enter image description here][1] uses if that helps address the problem as well [1]: /media/images/…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

Thanks, @gabrielhoffman My understanding is that both options would still be mixed models: Even with technical replicates (3 wells per d…

Votes

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Transcript-level differential expression using DESeq2

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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Popular Question to joseph.joonsang • 0

Popular Question to Hans-Ulrich Klein ▴ 330