Bioconductor Normalized counts

Showing : normalized counts • reset

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875

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scran scater normalized counts

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by Radek ▴ 90

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774

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deseq2 normalized counts

updated 4.8 years ago by Steve Lianoglou 13k • written 4.8 years ago by anaQ • 0

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1.2k

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normalized counts log2

5.0 years ago agdif ▴ 10

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7.2k

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rnaseq deseq2 normalized counts

updated 5.3 years ago by Michael Love 40k • written 5.3 years ago by JoannaF ▴ 10

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3.6k

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deseq2 normalization normalized counts

updated 5.5 years ago by Michael Love 40k • written 5.5 years ago by naets_matthias • 0

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1.2k

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edger batch effect normalized counts

updated 5.7 years ago by Ryan C. Thompson 7.8k • written 5.7 years ago by Yahan • 0

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1.0k

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deseq2 cqn normalization normalized counts

updated 6.0 years ago by Michael Love 40k • written 6.0 years ago by mark.ebbert • 0

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851

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normalized counts grch37 grch38 r bioconductor

6.0 years ago salvocomplicazioni1 • 0

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1.4k

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cn.mops log normalized counts table

updated 6.2 years ago by Günter Klambauer ▴ 540 • written 6.2 years ago by falk.zakrzewski • 0

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1.2k

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deseq2 counts normalized counts

updated 7.2 years ago by Steve Lianoglou 13k • written 7.2 years ago by snamjoshi87 ▴ 40

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1.7k

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shrna edger deseq2 differential expression normalized counts

7.2 years ago Jane Merlevede ▴ 90

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2.2k

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diffbind normalized counts

7.2 years ago GFM ▴ 20

12 results • Page 1 of 1

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Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k

I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…

Comment: Biostrings error at retrieving protein sequences by Hervé Pagès 16k

Yes, but you need to put the clean names back on the AAStringSet object: ``` names(protein_sequences) <- gsub(" .*", "", names(protein_sequ…

Comment: Exporting DESeq2 filtered results by camillab. ▴ 10

thanks! I didn't`t notice that. I will cancel it now!

Votes

Batch Effect in DESeq2, how to control, how to remove it, how to address biological question

A: BiomaRt Arabidopsis genome unavailable

Answer: enrichKEGG

A: Effect of lfcThreshold on p-value in DESeq2

Comment: Mixed up sample info with plotPCA

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