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nucler
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NucleR: processReads/solveUserSEW0 - Error
IRanges
ShortRead
nucleR
IRanges
ShortRead
nucleR
12.5 years ago
Stefanie Ververs
▴ 70
4
votes
5
replies
1.7k
views
No BAM option in readAligned from the ShortRead package
bioconductor
shortread
bam file
nucler
updated 6.2 years ago by
Dario Strbenac
★ 1.5k • written 6.2 years ago by
jfgout
▴ 10
0
votes
0
replies
967
views
question regarding the behavior of function processReads in package nucleR
nucleR
nucleR
10.4 years ago
Ulrike Goebel
▴ 10
0
votes
1
reply
770
views
Error: cannot allocate vector of size 878.2 Mb
software error
nucleR
updated 4.4 years ago by
James W. MacDonald
65k • written 4.4 years ago by
anne.kannengiesser
• 0
4 results • Page
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Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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