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oligo
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1
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5
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pd.mogene.2.0st Error Installing in R 3.1.2
oligo
microarray
r
bioconductor
written 9.1 years ago by
chandlerjd58
▴ 10
0
votes
5
replies
2.0k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation
affy
oligo
ffpe
Annotation
affy
oligo
ffpe
written 10.2 years ago by
Guest User
★ 13k
0
votes
3
replies
1.5k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R
oligoClasses
Oligoclass
Bioconductor
Oligo
written 3.1 years ago by
tanya
• 0
1
vote
4
replies
617
views
How to annotate mir4.1 arrays?
AffymetrixChip
miRNA
oligo
10 months ago • updated 7 months ago
richardallenfriedmanbrooklyn
▴ 20
2
votes
1
reply
615
views
Using oligo or xps to read and convert RNA-seq data CEL file to txt file.
oligoData
DataImport
oligo
RNASeqData
convert
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
rodj5201
• 0
0
votes
1
reply
548
views
Can't make a boxplot or hist with oligo
oligo
updated 11 months ago by
James W. MacDonald
65k • written 11 months ago by
i.am.filippov
• 0
0
votes
2
replies
319
views
Error Oligo package asking for pd.2.0 package annotation
oligo
updated 3 months ago by
Guido Hooiveld
★ 3.9k • written 3 months ago by
alantb_cederj
• 0
0
votes
4
replies
296
views
Unable to annotate ExpressionSet object from hugene11st chip
oligo
limma
hugene11stprobeset.db
AffymetrixChip
10 days ago • updated 2 days ago
Efra
• 0
8 results • Page
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Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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