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Showing :
oligoClasses
•
reset
2
votes
8
replies
1.1k
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses
oligo
pdInfoBuilder
2.7 years ago • updated 2.6 years ago
efoss
▴ 10
0
votes
8
replies
2.1k
views
vsn preprocess with oligo package
vsn
oligo
oligoClasses
vsn
oligo
oligoClasses
updated 11.2 years ago by
James W. MacDonald
65k • written 11.2 years ago by
José LÓPEZ
▴ 110
0
votes
7
replies
1.7k
views
oligo and GenericPDInfo
affy
oligoclasses
oligo package
pdinfobuilder
annotationdbi
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
Aedin Culhane
▴ 510
2
votes
6
replies
3.7k
views
Can't install package oligoClasses
R
oligoClasses
ff
updated 3.6 years ago by
Kevin Blighe
★ 3.9k • written 3.6 years ago by
salamandra
▴ 20
0
votes
4
replies
2.7k
views
Problems with 'affxparser' package
oligoClasses
oligoClasses
11.2 years ago
Valor Becerra, Luis Miguel
▴ 30
0
votes
4
replies
2.9k
views
Error : package slot missing from signature for generic
Biobase
lumi
oligoClasses
Biobase
lumi
oligoClasses
11.7 years ago
Mark Cowley
▴ 910
3
votes
4
replies
1.7k
views
cause 'memory not mapped' when use oligo
oligo
oligoClasses
oligo
oligoClasses
updated 11.5 years ago by
Benilton Carvalho
▴ 50 • written 11.5 years ago by
Ou, Jianhong
★ 1.3k
2
votes
4
replies
1.3k
views
getProbeInfo and exprs return matrices and data.frames of different dimensions
oligo
oligoclasses
affy
updated 7.4 years ago by
James W. MacDonald
65k • written 7.4 years ago by
mark.aaron.fisher
• 0
0
votes
3
replies
1.5k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R
oligoClasses
Oligoclass
Bioconductor
Oligo
written 3.1 years ago by
tanya
• 0
0
votes
2
replies
1.4k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation
oligo
pdInfoBuilder
oligoClasses
Annotation
oligo
pdInfoBuilder
oligoClasses
updated 12.0 years ago by
Benilton Carvalho
★ 4.3k • written 12.0 years ago by
Groot, Philip de
▴ 630
2
votes
2
replies
1.9k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges
oligoclasses
BiocGenerics
5.8 years ago
GENOMIC_region
• 0
0
votes
2
replies
2.4k
views
Cannot install Oligo package
oligo
oligoclasses
7.7 years ago
Anna Dvorkin
▴ 40
0
votes
2
replies
1.8k
views
pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews
Annotation
Organism
biocViews
oligo
oligoClasses
BiocViews
BiocViews
Annotation
updated 8.9 years ago by
Jason Hubbard
▴ 20 • written 10.2 years ago by
Guilherme Rocha
▴ 40
0
votes
1
reply
1.4k
views
limma2annaffy
GO
GUI
annaffy
oligo
oligoClasses
KEGGREST
GO
GUI
annaffy
oligo
oligoClasses
KEGGREST
updated 10.3 years ago by
James W. MacDonald
65k • written 10.3 years ago by
Guest User
★ 13k
2
votes
1
reply
1.2k
views
Output of ArrayExpress() function
oligo
oligoclasses
arrayexpress
updated 7.2 years ago by
James W. MacDonald
65k • written 7.2 years ago by
ste0891
• 0
0
votes
0
replies
1.2k
views
Question about using oligo and SNPchip for copy number analysis
SNP
Cancer
graph
oligo
SNPchip
oligoClasses
VanillaICE
crlmm
SNP
Cancer
graph
oligo
14.9 years ago
Min-Han Tan
▴ 40
0
votes
0
replies
849
views
Bioconductor Digest, Vol 68, Issue 7
oligo
pdInfoBuilder
oligoClasses
oligo
pdInfoBuilder
oligoClasses
15.5 years ago
Matt Settles
▴ 70
0
votes
0
replies
1.5k
views
Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'
oligo
oligoClasses
oligo
oligoClasses
10.2 years ago
Peter Crisp
▴ 10
18 results • Page
1 of 1
Recent ...
Replies
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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