Showing : oligoClasses • reset
2
votes
8
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414
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses oligo pdInfoBuilder
10 months ago • updated 9 months ago efoss ▴ 10
0
votes
2
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489
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
updated 15 months ago by 25k • written 15 months ago by • 0
2
votes
6
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2.6k
views
Can't install package oligoClasses
R oligoClasses ff
updated 20 months ago by 3.5k • written 20 months ago by ▴ 20
2
votes
2
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1.3k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
3.9 years ago GENOMIC_region • 0
0
votes
7
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1.1k
views
oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 4.9 years ago by 60k • written 4.9 years ago by ▴ 510
2
votes
1
reply
760
views
Output of ArrayExpress() function
oligo oligoclasses arrayexpress
updated 5.3 years ago by 60k • written 5.3 years ago by • 0
2
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4
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867
views
getProbeInfo and exprs return matrices and data.frames of different dimensions
oligo oligoclasses affy
updated 5.6 years ago by 60k • written 5.6 years ago by • 0
0
votes
2
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1.8k
views
Cannot install Oligo package
oligo oligoclasses
5.8 years ago Anna Dvorkin ▴ 40
0
votes
2
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1.3k
views
pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews Annotation Organism biocViews oligo oligoClasses BiocViews BiocViews Annotation
updated 7.0 years ago by ▴ 20 • written 8.3 years ago by ▴ 40
0
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0
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1.2k
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Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'
oligo oligoClasses oligo oligoClasses
8.4 years ago Peter Crisp ▴ 10
0
votes
1
reply
1.1k
views
limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 8.4 years ago by 60k • written 8.4 years ago by ★ 12k
0
votes
8
replies
1.4k
views
vsn preprocess with oligo package
vsn oligo oligoClasses vsn oligo oligoClasses
updated 9.4 years ago by 60k • written 9.4 years ago by ▴ 110
0
votes
4
replies
2.2k
views
Problems with 'affxparser' package
oligoClasses oligoClasses
9.4 years ago Valor Becerra, Luis Miguel ▴ 30
3
votes
4
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1.2k
views
cause 'memory not mapped' when use oligo
oligo oligoClasses oligo oligoClasses
updated 9.7 years ago by ▴ 50 • written 9.7 years ago by ★ 1.3k
0
votes
4
replies
2.1k
views
Error : package slot missing from signature for generic
Biobase lumi oligoClasses Biobase lumi oligoClasses
9.8 years ago Mark Cowley ▴ 910
0
votes
2
replies
1.1k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation oligo pdInfoBuilder oligoClasses Annotation oligo pdInfoBuilder oligoClasses
updated 10.2 years ago by ★ 4.3k • written 10.2 years ago by ▴ 630
0
votes
0
replies
916
views
Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
13.0 years ago Min-Han Tan ▴ 40
0
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0
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583
views
Bioconductor Digest, Vol 68, Issue 7
oligo pdInfoBuilder oligoClasses oligo pdInfoBuilder oligoClasses
13.6 years ago Matt Settles ▴ 70
18 results • Page 1 of 1
Recent ...
Replies
Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa by priyanka.m • 0
Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.
Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values by wahaha • 0
I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…
Answer: DESeq2 how to specify contrast to test difference of differences by Nicole • 0
The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…
Comment: DESeq2 how to specify contrast to test difference of differences by Nicole • 0
Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…
Comment: Rsamtools is not available for (for R version 4.0.2) by olinares-perdomo • 0
I had the same problem (R 4.2.0) I used BiocManager::install("Rsamtools", force = TRUE) And it is working fine
Votes
Answer: DESeq2 how to specify contrast to test difference of differences
Comment: DESeq2 how to specify contrast to test difference of differences
Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a
Answer: biomaRt error unable to fix: need help troubleshooting
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
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