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Showing :
oligoclasses
•
reset
0
votes
3
replies
1.6k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R
oligoClasses
Oligoclass
Bioconductor
Oligo
written 3.1 years ago by
tanya
• 0
2
votes
8
replies
1.1k
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses
oligo
pdInfoBuilder
2.8 years ago • updated 2.7 years ago
efoss
▴ 10
2
votes
6
replies
3.8k
views
Can't install package oligoClasses
R
oligoClasses
ff
updated 3.6 years ago by
Kevin Blighe
★ 3.9k • written 3.6 years ago by
salamandra
▴ 20
2
votes
2
replies
1.9k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges
oligoclasses
BiocGenerics
5.8 years ago
GENOMIC_region
• 0
0
votes
7
replies
1.7k
views
oligo and GenericPDInfo
affy
oligoclasses
oligo package
pdinfobuilder
annotationdbi
updated 6.8 years ago by
James W. MacDonald
65k • written 6.8 years ago by
Aedin Culhane
▴ 510
2
votes
1
reply
1.2k
views
Output of ArrayExpress() function
oligo
oligoclasses
arrayexpress
updated 7.2 years ago by
James W. MacDonald
65k • written 7.2 years ago by
ste0891
• 0
2
votes
4
replies
1.3k
views
getProbeInfo and exprs return matrices and data.frames of different dimensions
oligo
oligoclasses
affy
updated 7.5 years ago by
James W. MacDonald
65k • written 7.5 years ago by
mark.aaron.fisher
• 0
0
votes
2
replies
2.4k
views
Cannot install Oligo package
oligo
oligoclasses
7.7 years ago
Anna Dvorkin
▴ 40
0
votes
2
replies
1.8k
views
pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews
Annotation
Organism
biocViews
oligo
oligoClasses
BiocViews
BiocViews
Annotation
updated 8.9 years ago by
Jason Hubbard
▴ 20 • written 10.2 years ago by
Guilherme Rocha
▴ 40
0
votes
0
replies
1.5k
views
Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'
oligo
oligoClasses
oligo
oligoClasses
10.3 years ago
Peter Crisp
▴ 10
0
votes
1
reply
1.5k
views
limma2annaffy
GO
GUI
annaffy
oligo
oligoClasses
KEGGREST
GO
GUI
annaffy
oligo
oligoClasses
KEGGREST
updated 10.3 years ago by
James W. MacDonald
65k • written 10.3 years ago by
Guest User
★ 13k
0
votes
8
replies
2.1k
views
vsn preprocess with oligo package
vsn
oligo
oligoClasses
vsn
oligo
oligoClasses
updated 11.3 years ago by
James W. MacDonald
65k • written 11.3 years ago by
José LÓPEZ
▴ 110
0
votes
4
replies
2.8k
views
Problems with 'affxparser' package
oligoClasses
oligoClasses
11.3 years ago
Valor Becerra, Luis Miguel
▴ 30
3
votes
4
replies
1.7k
views
cause 'memory not mapped' when use oligo
oligo
oligoClasses
oligo
oligoClasses
updated 11.6 years ago by
Benilton Carvalho
▴ 50 • written 11.6 years ago by
Ou, Jianhong
★ 1.3k
0
votes
4
replies
2.9k
views
Error : package slot missing from signature for generic
Biobase
lumi
oligoClasses
Biobase
lumi
oligoClasses
11.7 years ago
Mark Cowley
▴ 910
0
votes
2
replies
1.4k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation
oligo
pdInfoBuilder
oligoClasses
Annotation
oligo
pdInfoBuilder
oligoClasses
updated 12.1 years ago by
Benilton Carvalho
★ 4.3k • written 12.1 years ago by
Groot, Philip de
▴ 630
0
votes
0
replies
1.3k
views
Question about using oligo and SNPchip for copy number analysis
SNP
Cancer
graph
oligo
SNPchip
oligoClasses
VanillaICE
crlmm
SNP
Cancer
graph
oligo
14.9 years ago
Min-Han Tan
▴ 40
0
votes
0
replies
857
views
Bioconductor Digest, Vol 68, Issue 7
oligo
pdInfoBuilder
oligoClasses
oligo
pdInfoBuilder
oligoClasses
15.5 years ago
Matt Settles
▴ 70
18 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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