Showing : omiccircos • reset
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Question about OmicCircos
OmicCircos
6.0 years ago ch8316f5eyu • 0
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Synteny plots with OmicCircos or Rcircos
omiccircos rcircos
6.6 years ago mictadlo ▴ 10
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Omiccircos: how to draw a circos plot for non-model organisms
omiccircos seganglepo sim.circos circos
6.6 years ago Didi ▴ 10
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Making a circos plot to show expression for a gene set rather than whole genome
Gene set gene set analysis omiccircos
updated 6.7 years ago by ▴ 20 • written 9.3 years ago by • 0
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OmicCircos: included UCSC.hg19.chr dataframe is actually hg18 cytobands
omiccircos bug hg19 hg18 data
7.0 years ago matthew.bashton • 0
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1.5k
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Circos Tile colors
OmicCircos RCircos
updated 7.0 years ago by ▴ 150 • written 7.0 years ago by ▴ 90
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OmicCircos - Error in 1:scale.n : NA/NaN argument
OmicCircos
7.1 years ago Stefan Langenberg • 0
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1.1k
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OmicCircos Error in Colnames attribute mus be the same length as the vector
r omiccircos
7.2 years ago theobroma22 ▴ 10
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1.3k
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OmicCircos barplot height and scale
omiccircos
7.3 years ago Miss Agnieszka Aleksandra Golicz ▴ 40
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OmicCircos for non human genomes
omiccircos rnaseq plants
7.3 years ago Didi ▴ 10
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841
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Zoom function in OmicCircos
OmicCircos Zoom
7.3 years ago abmora • 0
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757
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How to plot a single segment using OmicCircos?
omiccircos
7.7 years ago Shambho • 0
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762
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the 23re and 24th segs cannot be plotted
OmicCircos
7.8 years ago magcj89 ▴ 10
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How to represent a relationship between physical map and linkage map of a sequenced data using OmicCircos or another similar
omiccircos software R bioconductor for genomic data science linkage disequilibrium
updated 8.1 years ago by ▴ 50 • written 8.1 years ago by • 0
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Can OmicCircos handle chicken ChIA-PET interactome?
OmicCircos chicken
8.3 years ago Gary ▴ 20
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Circos Styling plots is now easy with canceR package
canceR visualization omiccircos
8.9 years ago kmezhoud ▴ 10
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1.3k
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News: OmicCircos was updated
visualization omiccircos News
9.1 years ago Hu, Ying NIH/NCI [E] ▴ 50
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1.5k
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OmicCircos mapping data file.
omiccircos
updated 9.1 years ago by ▴ 50 • written 9.5 years ago by ▴ 60
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1.7k
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extdata missing for non-human OmicCircos plots?
OmicCircos
updated 9.1 years ago by ▴ 50 • written 9.5 years ago by • 0
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1.9k
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How to specifiy colors for polygon links when using circos function of OmicCircos package
graph omiccircos
updated 9.2 years ago by ▴ 50 • written 9.2 years ago by • 0
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1.3k
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Larger values masking others for OmicCircos heatmap
differential gene expression heatmap Circos omiccircos
9.3 years ago Peter.Wood • 0
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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
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Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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