Showing : omiccircos • reset
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Making a circos plot to show expression for a gene set rather than whole genome
Gene set gene set analysis omiccircos
updated 6.7 years ago by ▴ 20 • written 9.3 years ago by • 0
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3
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1.5k
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OmicCircos mapping data file.
omiccircos
updated 9.1 years ago by ▴ 50 • written 9.5 years ago by ▴ 60
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2
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1.9k
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How to specifiy colors for polygon links when using circos function of OmicCircos package
graph omiccircos
updated 9.2 years ago by ▴ 50 • written 9.2 years ago by • 0
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1
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1.5k
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Circos Tile colors
OmicCircos RCircos
updated 7.0 years ago by ▴ 150 • written 7.0 years ago by ▴ 90
3
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2
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2.6k
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How to represent a relationship between physical map and linkage map of a sequenced data using OmicCircos or another similar
omiccircos software R bioconductor for genomic data science linkage disequilibrium
updated 8.1 years ago by ▴ 50 • written 8.1 years ago by • 0
0
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1
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1.7k
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extdata missing for non-human OmicCircos plots?
OmicCircos
updated 9.1 years ago by ▴ 50 • written 9.5 years ago by • 0
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0
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761
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How to plot a single segment using OmicCircos?
omiccircos
7.7 years ago Shambho • 0
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0
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844
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Zoom function in OmicCircos
OmicCircos Zoom
7.3 years ago abmora • 0
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0
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733
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OmicCircos for non human genomes
omiccircos rnaseq plants
7.3 years ago Didi ▴ 10
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1.3k
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OmicCircos barplot height and scale
omiccircos
7.3 years ago Miss Agnieszka Aleksandra Golicz ▴ 40
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1.1k
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OmicCircos Error in Colnames attribute mus be the same length as the vector
r omiccircos
7.3 years ago theobroma22 ▴ 10
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2.3k
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OmicCircos - Error in 1:scale.n : NA/NaN argument
OmicCircos
7.1 years ago Stefan Langenberg • 0
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0
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1.2k
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OmicCircos: included UCSC.hg19.chr dataframe is actually hg18 cytobands
omiccircos bug hg19 hg18 data
7.0 years ago matthew.bashton • 0
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Omiccircos: how to draw a circos plot for non-model organisms
omiccircos seganglepo sim.circos circos
6.7 years ago Didi ▴ 10
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910
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Synteny plots with OmicCircos or Rcircos
omiccircos rcircos
6.6 years ago mictadlo ▴ 10
0
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612
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Question about OmicCircos
OmicCircos
6.0 years ago ch8316f5eyu • 0
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1
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1.3k
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Larger values masking others for OmicCircos heatmap
differential gene expression heatmap Circos omiccircos
9.3 years ago Peter.Wood • 0
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0
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1.3k
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News: OmicCircos was updated
visualization omiccircos News
9.1 years ago Hu, Ying NIH/NCI [E] ▴ 50
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1.4k
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Circos Styling plots is now easy with canceR package
canceR visualization omiccircos
9.0 years ago kmezhoud ▴ 10
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0
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1.3k
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Can OmicCircos handle chicken ChIA-PET interactome?
OmicCircos chicken
8.3 years ago Gary ▴ 20
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764
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the 23re and 24th segs cannot be plotted
OmicCircos
7.8 years ago magcj89 ▴ 10
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Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …
Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k
This comment helps.
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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