Bioconductor Onechannel

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3.7k

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Microarray OneChannel TwoChannel DataImport bridge GEOquery Microarray OneChannel bridge

updated 17.1 years ago by Sean Davis 21k • written 17.1 years ago by Wittner, Ben ▴ 290

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3.2k

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wgcna twochannel onechannel

updated 10.1 years ago by Peter Langfelder ★ 3.0k • written 10.1 years ago by jeiroje ▴ 20

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1.8k

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Microarray OneChannel Annotation Normalization probe Biobase annotate genefilter affy vsn

updated 16.0 years ago by Pan Du ★ 1.2k • written 16.0 years ago by Steve Taylor ▴ 280

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1.7k

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limma microarray onechannel red custom

updated 9.2 years ago by Gordon Smyth 52k • written 9.2 years ago by dario.veneziano • 0

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1.4k

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Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

17.6 years ago Amin Moghaddasi ▴ 130

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788

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OneChannel OneChannel

13.5 years ago Guido Leoni ▴ 200

6 results • Page 1 of 1

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Comment: Differential Expression Genes as Independent Variables by Dario Strbenac ★ 1.5k

Also, the reason why gene abundance is the dependent variable and is iterated over is that there are far more genes than there are samples …

Comment: rrvgo::calculateSimMatrix() error by Phila • 0

Thanks for sharing the solution. It helps me. [nced cloud][1] [1]: https://my-ncedcloud-login.us/

Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 170

For your proteomics data, your normalization is correct. I had assumed it was RNA-seq because that is what I think about most. When using…

Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10

@gordonsmyth I will re-run Salmon with the --numGibbsSamples=50 option. Thank you.

Comment: Differential Expression Genes as Independent Variables by Gordon Smyth 52k

Such an analysis cannot be done in limma. Sorry, I cannot tell you how to do it or even whether it is possible.

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Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Transcript-level differential expression using DESeq2

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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