Bioconductor Onechannel

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2.7k

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wgcna twochannel onechannel

updated 8.9 years ago by Peter Langfelder ★ 2.8k • written 8.9 years ago by jeiroje ▴ 20

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1.4k

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limma microarray onechannel red custom

updated 8.0 years ago by Gordon Smyth 48k • written 8.0 years ago by dario.veneziano • 0

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1.0k

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Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

16.4 years ago Amin Moghaddasi ▴ 130

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3.2k

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Microarray OneChannel TwoChannel DataImport bridge GEOquery Microarray OneChannel bridge

updated 15.9 years ago by Sean Davis 21k • written 15.9 years ago by Wittner, Ben ▴ 290

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1.4k

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Microarray OneChannel Annotation Normalization probe Biobase annotate genefilter affy vsn

updated 14.9 years ago by Pan Du ★ 1.2k • written 14.9 years ago by Steve Taylor ▴ 280

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606

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OneChannel OneChannel

12.4 years ago Guido Leoni ▴ 200

6 results • Page 1 of 1

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Answer: Is SeqSQC compatible with hg38? by James W. MacDonald 63k

I'll answer your question with a question. Is there any reason to believe that things like IBD or PCA or Sex checks would be dependent on t…

Comment: using featureCounts (Subread) to count only spliced reads per gene - behavior of by Gregory • 0

Thanks for the prompt response, Gordon. I'm looking for count at the gene level - the gene id is the meta feature, so one row per gene in …

Comment: DiffBind handling of replicates and consensus by Rory Stark ★ 5.0k

You may want to try different values for the `normalize` parameter: dbObj <- dba.normalize(DBA = dbObj, library = "RiP", normalize=DBA…

Comment: DiffBind: dba.plotProfile(profiles) by Rory Stark ★ 5.0k

Yes, setting `raster_quality` down is a good way to address this issue. I've taken to using `raster_quality=1` in general as I think the pl…

Comment: DiffBind: dba.plotProfile(profiles) by Dorien ▴ 10

Not really an answer as I don't know really know why , but I also had the same issue and may have found a workaround ! If I set maxSites > …

Votes

Answer: How do I merge a list of GRanges?

Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar

Comment: DiffBind: dba.plotProfile(profiles)

Answer: DiffBind - how to prep the sample matrix when multiple bam files are used by MAC

Comment: DiffBind: dba.plotProfile(profiles)

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