Showing : onechannelgui • reset
0
votes
15
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3.2k
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Exon array annotation with limma?
Normalization limma biomaRt oneChannelGUI Normalization limma biomaRt oneChannelGUI
updated 16.0 years ago by ▴ 500 • written 16.0 years ago by ▴ 220
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3
replies
2.1k
views
problem with oneChannelGUI
onechannelgui exon array analysis R
10.2 years ago anna.dolnik • 0
0
votes
6
replies
2.3k
views
BioStrings questions
probe oneChannelGUI probe oneChannelGUI
17.2 years ago rcaloger ▴ 500
0
votes
8
replies
2.5k
views
oneChannelGUI
Rgraphviz affylmGUI oneChannelGUI Rgraphviz affylmGUI oneChannelGUI
updated 15.1 years ago by ▴ 500 • written 15.1 years ago by ▴ 200
0
votes
1
reply
1.3k
views
Problem with oneChannelGUI
oneChannelGUI oneChannelGUI
updated 14.7 years ago by ▴ 200 • written 14.7 years ago by ▴ 500
0
votes
2
replies
1.9k
views
conditions to apply BH correction
oneChannelGUI oneChannelGUI
updated 14.6 years ago by ▴ 70 • written 14.6 years ago by ▴ 10
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votes
1
reply
1.4k
views
Basic question about GENE 1.0 ST
biomaRt oneChannelGUI biomaRt oneChannelGUI
updated 14.0 years ago by ▴ 60 • written 14.0 years ago by ▴ 200
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3
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1.5k
views
oneChannelGUI problem
graph oneChannelGUI graph oneChannelGUI
updated 17.8 years ago by ▴ 500 • written 17.8 years ago by ▴ 320
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5
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2.7k
views
Analysing Human Gene ST 1.0 Arrays with oligo and oneChannelGUI yield different number of probesets
Preprocessing cdf oligo oneChannelGUI Preprocessing cdf oligo oneChannelGUI
updated 16.1 years ago by ★ 4.3k • written 16.1 years ago by ▴ 840
0
votes
1
reply
1.6k
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different normalized results using oneChannelGUI and oligo packages
GO limma oligo oneChannelGUI GO limma oligo oneChannelGUI
updated 16.1 years ago by ★ 4.3k • written 16.1 years ago by ▴ 840
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3
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13k
views
How to combine expression values of multiple probes for one gene
probe convert geneexpression onechannelgui
updated 10.4 years ago by ▴ 840 • written 10.4 years ago by ▴ 10
0
votes
5
replies
1.6k
views
different normalized results using oneChannelGUI, and oligo packages
Normalization limma oligo oneChannelGUI Normalization limma oligo oneChannelGUI
updated 16.1 years ago by ★ 4.3k • written 16.1 years ago by ▴ 500
0
votes
1
reply
1.5k
views
oneChannelGUI and hugene10stv1cdf
oneChannelGUI oneChannelGUI
updated 17.5 years ago by ▴ 500 • written 17.5 years ago by ▴ 280
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votes
1
reply
1.3k
views
Difficulty installing oneChannelGUI in Vista
Cancer affylmGUI oneChannelGUI Cancer affylmGUI oneChannelGUI
updated 15.5 years ago by 68k • written 15.5 years ago by ★ 2.0k
0
votes
1
reply
1.2k
views
export contrast results in OneChannelGUI
limma oneChannelGUI limma oneChannelGUI
updated 16.1 years ago by ▴ 500 • written 16.1 years ago by ▴ 840
0
votes
8
replies
2.3k
views
oneChannelGUI and Affymetrix 1.0 ST arrays
GO probe oneChannelGUI GO probe oneChannelGUI
updated 15.5 years ago by ▴ 500 • written 15.5 years ago by ▴ 280
0
votes
2
replies
1.4k
views
Question about inspecting splices indexes (oneChannelGUI)
oneChannelGUI oneChannelGUI
16.5 years ago • updated 16.4 years ago Guido Leoni ▴ 20
0
votes
2
replies
1.5k
views
Problems running oneChannelGUI
probe oneChannelGUI probe oneChannelGUI
updated 15.0 years ago by ▴ 910 • written 15.0 years ago by ▴ 200
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votes
5
replies
1.5k
views
Problem with oneChannelGUI
oneChannelGUI oneChannelGUI
updated 14.7 years ago by 25k • written 14.7 years ago by ▴ 200
0
votes
0
replies
1.7k
views
News: Initial List of Deprecated Packages for Bioc3.6
deprecate EWCE MAIT stepwiseCM onechannelgui News
8.4 years ago shepherl 4.2k
0
votes
0
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949
views
Errors in importing cel files into oneChannelGUI
probe oneChannelGUI probe oneChannelGUI
18.1 years ago Ester Feldmesser ▴ 60
0
votes
0
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1.4k
views
Problem with oneChannelGUI
GUI Biobase affy affyio oneChannelGUI preprocessCore GUI Biobase affy affyio
17.5 years ago Luc Vallieres ▴ 20
0
votes
0
replies
1.1k
views
onechannelGUI error,
probe oneChannelGUI probe oneChannelGUI
16.6 years ago PJARES@clinic.ub.es ▴ 30
0
votes
0
replies
1.2k
views
onechannelGUI error
probe oneChannelGUI probe oneChannelGUI
16.6 years ago rcaloger ▴ 500
0
votes
0
replies
1.2k
views
Question about inspecting splices indexes
Organism probe oneChannelGUI Organism probe oneChannelGUI
16.4 years ago raffaele calogero ▴ 500
0
votes
0
replies
1.3k
views
Analysing Human Gene ST 1.0 Arrays with oligo and, oneChannelGUI yield different number of probesets
Preprocessing oneChannelGUI Preprocessing oneChannelGUI
16.1 years ago rcaloger ▴ 500
0
votes
0
replies
1.0k
views
Exon array annotation with limma?
Annotation oneChannelGUI Annotation oneChannelGUI
16.0 years ago Michael Imbeault ▴ 220
0
votes
0
replies
1.2k
views
Different result from gcrma function by using command line gcrma, affylmGUI and oneChannelGUI.
gcrma affylmGUI oneChannelGUI gcrma affylmGUI oneChannelGUI
15.3 years ago Lin Ying ▴ 10
0
votes
0
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1.8k
views
annotations of Human Gene 1.0 ST microarray and oneChannelGUI
Microarray Normalization probe oneChannelGUI Microarray Normalization probe oneChannelGUI
15.3 years ago rcaloger ▴ 500
0
votes
0
replies
1.3k
views
problems with oneChannelGUI
affylmGUI oneChannelGUI ASSIGN affylmGUI oneChannelGUI ASSIGN
13.7 years ago Manuela Di Russo ▴ 70
0
votes
0
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1.1k
views
Introductory workshop for RNA-seq 27-28 March 2013, Torino, Italy
Network oneChannelGUI Network oneChannelGUI
12.9 years ago raffaele calogero ▴ 500
0
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0
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1.2k
views
oneChannelGUI - setting APT tools folder
software error microarray onechannelgui
11.1 years ago nextgenseq.bioinfo • 0
0
votes
0
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2.2k
views
News: RNAseq data analysis courses: Torino (Italy) : Beginner course March 17-19 2015 & Advance Course April 14-16 2015
rnaseq mirna onechannelgui chimera News
11.0 years ago raffaele calogero ▴ 500
0
votes
0
replies
1.5k
views
annotations of Human Gene 1.0 ST microarray and oneChannelGUI
Microarray Normalization GO probe oneChannelGUI Microarray Normalization GO probe
15.3 years ago ifig319@ifi.csic.es ▴ 10
34 results • Page 1 of 1
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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