Showing : onechannelgui • reset
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annotations of Human Gene 1.0 ST microarray and oneChannelGUI
Microarray Normalization GO probe oneChannelGUI Microarray Normalization GO probe
13.7 years ago ifig319@ifi.csic.es ▴ 10
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Errors in importing cel files into oneChannelGUI
probe oneChannelGUI probe oneChannelGUI
16.5 years ago Ester Feldmesser ▴ 60
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3
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1.1k
views
oneChannelGUI problem
graph oneChannelGUI graph oneChannelGUI
updated 16.2 years ago by ▴ 500 • written 16.2 years ago by ▴ 320
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oneChannelGUI and hugene10stv1cdf
oneChannelGUI oneChannelGUI
updated 15.9 years ago by ▴ 500 • written 15.9 years ago by ▴ 280
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export contrast results in OneChannelGUI
limma oneChannelGUI limma oneChannelGUI
updated 14.5 years ago by ▴ 500 • written 14.5 years ago by ▴ 840
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Problem with oneChannelGUI
GUI Biobase affy affyio oneChannelGUI preprocessCore GUI Biobase affy affyio
15.8 years ago Luc Vallieres ▴ 20
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1.7k
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BioStrings questions
probe oneChannelGUI probe oneChannelGUI
15.5 years ago rcaloger ▴ 500
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onechannelGUI error,
probe oneChannelGUI probe oneChannelGUI
14.9 years ago PJARES@clinic.ub.es ▴ 30
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926
views
onechannelGUI error
probe oneChannelGUI probe oneChannelGUI
14.9 years ago rcaloger ▴ 500
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Question about inspecting splices indexes (oneChannelGUI)
oneChannelGUI oneChannelGUI
14.8 years ago Guido Leoni ▴ 20
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Question about inspecting splices indexes
Organism probe oneChannelGUI Organism probe oneChannelGUI
14.8 years ago raffaele calogero ▴ 500
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Analysing Human Gene ST 1.0 Arrays with oligo and oneChannelGUI yield different number of probesets
Preprocessing cdf oligo oneChannelGUI Preprocessing cdf oligo oneChannelGUI
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 840
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Analysing Human Gene ST 1.0 Arrays with oligo and, oneChannelGUI yield different number of probesets
Preprocessing oneChannelGUI Preprocessing oneChannelGUI
14.5 years ago rcaloger ▴ 500
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1
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1.3k
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different normalized results using oneChannelGUI and oligo packages
GO limma oligo oneChannelGUI GO limma oligo oneChannelGUI
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 840
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1.2k
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different normalized results using oneChannelGUI, and oligo packages
Normalization limma oligo oneChannelGUI Normalization limma oligo oneChannelGUI
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 500
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15
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2.2k
views
Exon array annotation with limma?
Normalization limma biomaRt oneChannelGUI Normalization limma biomaRt oneChannelGUI
updated 14.3 years ago by ▴ 500 • written 14.4 years ago by ▴ 220
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763
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Exon array annotation with limma?
Annotation oneChannelGUI Annotation oneChannelGUI
14.3 years ago Michael Imbeault ▴ 220
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994
views
Difficulty installing oneChannelGUI in Vista
Cancer affylmGUI oneChannelGUI Cancer affylmGUI oneChannelGUI
updated 13.9 years ago by 65k • written 13.9 years ago by ★ 2.0k
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1.6k
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oneChannelGUI and Affymetrix 1.0 ST arrays
GO probe oneChannelGUI GO probe oneChannelGUI
updated 13.9 years ago by ▴ 500 • written 13.9 years ago by ▴ 280
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Different result from gcrma function by using command line gcrma, affylmGUI and oneChannelGUI.
gcrma affylmGUI oneChannelGUI gcrma affylmGUI oneChannelGUI
13.7 years ago Lin Ying ▴ 10
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annotations of Human Gene 1.0 ST microarray and oneChannelGUI
Microarray Normalization probe oneChannelGUI Microarray Normalization probe oneChannelGUI
13.7 years ago rcaloger ▴ 500
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8
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1.9k
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oneChannelGUI
Rgraphviz affylmGUI oneChannelGUI Rgraphviz affylmGUI oneChannelGUI
updated 13.4 years ago by ▴ 500 • written 13.4 years ago by ▴ 200
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2
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1.1k
views
Problems running oneChannelGUI
probe oneChannelGUI probe oneChannelGUI
updated 13.4 years ago by ▴ 910 • written 13.4 years ago by ▴ 200
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5
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1.0k
views
Problem with oneChannelGUI
oneChannelGUI oneChannelGUI
updated 13.1 years ago by 25k • written 13.1 years ago by ▴ 200
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958
views
Problem with oneChannelGUI
oneChannelGUI oneChannelGUI
updated 13.1 years ago by ▴ 200 • written 13.1 years ago by ▴ 500
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1.5k
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conditions to apply BH correction
oneChannelGUI oneChannelGUI
updated 13.0 years ago by ▴ 70 • written 13.0 years ago by ▴ 10
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1
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996
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Basic question about GENE 1.0 ST
biomaRt oneChannelGUI biomaRt oneChannelGUI
updated 12.3 years ago by ▴ 60 • written 12.3 years ago by ▴ 200
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problems with oneChannelGUI
affylmGUI oneChannelGUI ASSIGN affylmGUI oneChannelGUI ASSIGN
12.1 years ago Manuela Di Russo ▴ 70
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Introductory workshop for RNA-seq 27-28 March 2013, Torino, Italy
Network oneChannelGUI Network oneChannelGUI
11.2 years ago raffaele calogero ▴ 500
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oneChannelGUI - setting APT tools folder
software error microarray onechannelgui
9.5 years ago nextgenseq.bioinfo • 0
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News: RNAseq data analysis courses: Torino (Italy) : Beginner course March 17-19 2015 & Advance Course April 14-16 2015
rnaseq mirna onechannelgui chimera News
9.3 years ago raffaele calogero ▴ 500
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3
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11k
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How to combine expression values of multiple probes for one gene
probe convert geneexpression onechannelgui
updated 8.8 years ago by ▴ 830 • written 8.8 years ago by ▴ 10
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3
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1.6k
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problem with oneChannelGUI
onechannelgui exon array analysis R
8.5 years ago anna.dolnik • 0
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News: Initial List of Deprecated Packages for Bioc3.6
deprecate EWCE MAIT stepwiseCM onechannelgui News
6.7 years ago shepherl 3.8k
34 results • Page 1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Votes
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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